PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027174162.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27020.9 Da    PI: 8.714
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027174162.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.33.7e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRr+g+lKKA+EL +LCdaev vi+fsstgklye++s
  XP_027174162.1  9 KKIENVNSRQVTFSKRRAGLLKKAKELAILCDAEVGVIVFSSTGKLYEFAS 59
                    68***********************************************86 PP
2K-box68.62.1e-238316815100
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++ + +++ Lk+ei +Lq  qR++ G++L+ L+++eLq+Le+qL++++  ++++K+++lleq+e+++ +e+++  en+aLr+++ee
  XP_027174162.1  83 NKTEPQADALKSEIAKLQLVQRQMTGKELGGLNFQELQHLEHQLHEGILAVKDRKEQVLLEQLEKSKLQEQKVVLENEALREQVEE 168
                     45567899***************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MGRGKIEIKK IENVNSRQVT FSKRRAGLLK KAKELAILCD AEVGVIVFSS TGKLYEFAST  60
RMEQILARYN TNPESSKLIT MENKTEPQAD ALKSEIAKLQ LVQRQMTGKE LGGLNFQELQ  120
HLEHQLHEGI LAVKDRKEQV LLEQLEKSKL QEQKVVLENE ALREQVEEYR LRLYRENGQL  180
GRKNSGVCSS TVCDCRSEKD GNSDTSLRLG LSVDICHKRK KPKTESTSND SETLMVLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.17e-48MIKC_MADS family protein