PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174248.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

M-type_MADS

Protein Properties

Length: 712aa MW: 81310.8 Da PI: 4.6782

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.2	1.2e-14	11	58	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ie +s r vtfskRr+g++KK EL +a+vavi+fs+ g+ y+ XP_027174248.1 11 KKIEKESSRMVTFSKRRKGLFKKVRELQAKIGANVAVIVFSPAGNPYT 58 689****************************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence
MGSGKKKIEI KKIEKESSRM VTFSKRRKGL FKKVRELQAK IGANVAVIVF SPAGNPYTMG 60 DISLFDNALN KGTVPASGGA TFNGFDFEKG GKDANAFCAS TSNGLREWLD GIDVDGCAEI 120 EELLRMKEQL LVARERIQGL IRNTAAFAVN YPAYPSSIAR AVETLGGTEA IAKARSSESN 180 KLELHFRPED PYSHPAFGEL HTCNNFLLRI SKDRVSNAQD PELRKRVSSS SSADPVSLEQ 240 HESCSGSIET TAEAESQVVE ERQEHLSADI VACIGEAYHF NGMVDYQHVI AVHADIARRK 300 KRNWAEFVEK GGLMDVDQDD LMILVPPLFS LKDRPEKIVL KPCIHSSSKT KQEDMNQHHQ 360 ERNMEPSLAL DIDIEEIPKK VNWEKFIPEG SEQWVLQNIV AELFNERPIW VKDSLSEHLL 420 DKGLEFGENM LKRLLFRAAY YFSTGPFCRF WIRKGYDPRK DPESRIYQTM DFRVPVPLRS 480 YCEANSASRL KHRWEDICAF RAFPYKCQTS LQLFELADDY IQEEIRKPSN VEAFSKATGW 540 FSANVLETLR HRVAVRFLSV YPNAGAEAIL KSECDLFEKS KKMRLYPKNL KANEERQQDN 600 REVVENQEKE PNDEVDYEED EVNNIDDDID EEDFDAYEAI DPIGFQEGDF SPQQDSYTDH 660 ENMSRNYLQE LFGSFPFNAA GDNEMPDANI SDGEYEIYEH YSDENYSNDD EY

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence

MGSGKKKIEI KKIEKESSRM VTFSKRRKGL FKKVRELQAK IGANVAVIVF SPAGNPYTMG  60
DISLFDNALN KGTVPASGGA TFNGFDFEKG GKDANAFCAS TSNGLREWLD GIDVDGCAEI  120
EELLRMKEQL LVARERIQGL IRNTAAFAVN YPAYPSSIAR AVETLGGTEA IAKARSSESN  180
KLELHFRPED PYSHPAFGEL HTCNNFLLRI SKDRVSNAQD PELRKRVSSS SSADPVSLEQ  240
HESCSGSIET TAEAESQVVE ERQEHLSADI VACIGEAYHF NGMVDYQHVI AVHADIARRK  300
KRNWAEFVEK GGLMDVDQDD LMILVPPLFS LKDRPEKIVL KPCIHSSSKT KQEDMNQHHQ  360
ERNMEPSLAL DIDIEEIPKK VNWEKFIPEG SEQWVLQNIV AELFNERPIW VKDSLSEHLL  420
DKGLEFGENM LKRLLFRAAY YFSTGPFCRF WIRKGYDPRK DPESRIYQTM DFRVPVPLRS  480
YCEANSASRL KHRWEDICAF RAFPYKCQTS LQLFELADDY IQEEIRKPSN VEAFSKATGW  540
FSANVLETLR HRVAVRFLSV YPNAGAEAIL KSECDLFEKS KKMRLYPKNL KANEERQQDN  600
REVVENQEKE PNDEVDYEED EVNNIDDDID EEDFDAYEAI DPIGFQEGDF SPQQDSYTDH  660
ENMSRNYLQE LFGSFPFNAA GDNEMPDANI SDGEYEIYEH YSDENYSNDD EY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72350.1	5e-11	M-type_MADS family protein