PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174250.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 382aa MW: 41922.7 Da PI: 5.1635

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	3.9e-11	198	243	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + f L ++P + kK++K ++L A++Y+k+Lq XP_027174250.1 198 HIAAERKRREQLSQQFIALSAMVPGL-----KKMDKTSVLGDAIKYLKYLQ 243 999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MTIEREAMAN DVVDNSANSW LLDLELESPF LNDQYSQIMN FFDEDLPAAF GDDFQSPLSR 60 ECSSPTCFPT IIQGSSSSSS LCVSSIVMAP PLVVTERPAK QRKPNGCTLS NTHTMFNFDQ 120 ASSSPVILTF GNPNVPDISF EQVSLGNLYP EDEVVSGVLA SHGSFVNHVG VAAKATAVRT 180 KAKKPGSSTR PPSKSYDHIA AERKRREQLS QQFIALSAMV PGLKKMDKTS VLGDAIKYLK 240 YLQERVNTLE EKTTKQTVES VVLVKKSQGL LAEDEGSSDE TANTIDQLSL PEIEVKVCDK 300 KVLLRIRYGN QTGLLTKFIC KVEKLNLTVT NTSVAQFRDL ALDITIIAEM DKEFNLTAKE 360 LARCLQSALL PVEFLGKQTN NG

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MTIEREAMAN DVVDNSANSW LLDLELESPF LNDQYSQIMN FFDEDLPAAF GDDFQSPLSR  60
ECSSPTCFPT IIQGSSSSSS LCVSSIVMAP PLVVTERPAK QRKPNGCTLS NTHTMFNFDQ  120
ASSSPVILTF GNPNVPDISF EQVSLGNLYP EDEVVSGVLA SHGSFVNHVG VAAKATAVRT  180
KAKKPGSSTR PPSKSYDHIA AERKRREQLS QQFIALSAMV PGLKKMDKTS VLGDAIKYLK  240
YLQERVNTLE EKTTKQTVES VVLVKKSQGL LAEDEGSSDE TANTIDQLSL PEIEVKVCDK  300
KVLLRIRYGN QTGLLTKFIC KVEKLNLTVT NTSVAQFRDL ALDITIIAEM DKEFNLTAKE  360
LARCLQSALL PVEFLGKQTN NG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	207	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-52	bHLH family protein