PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174363.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 738aa MW: 86170.7 Da PI: 7.8373

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174363.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.2	6.3e-19	80	169	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fY +Y+k +GF +r+ ++kk+ +g + r + C++egkr++++ + ++++r+++a tr++Cka+lk++ + +k++v+ + +eH+H la XP_027174363.1 80 FYLNYGKAIGFGIRRGYKKKH-PDGYVRYRAWLCNREGKRDDKHIErQDRQREPKAMTRVNCKACLKIRYDLkIKKYVVSGFISEHTHRLA 169 9*************98887.8999**********99987757788899***********99889*************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence
MESWEDEIGR RHLVELDEEM DEESDDCEYV NPSRIEAEDD VEEEPNKEGN DEEVYEVVHN 60 MSHYDVMTMQ FETVKDAECF YLNYGKAIGF GIRRGYKKKH PDGYVRYRAW LCNREGKRDD 120 KHIERQDRQR EPKAMTRVNC KACLKIRYDL KIKKYVVSGF ISEHTHRLAS PESVAFMRSH 180 RRVSDGAYAQ AHTLRRIGVG ASQIVKLFAL QAGGYGNIGF TPKDLYNKLH SKRMEEIAGG 240 DAEAALAYMA GKNDGDLNFY FKYQLNDEGR LIRLFWADSR SRDDYRCFGD VLVFDSTYNT 300 NEYDFPLVVF CGVNNHYSTC IFGCALLVGE GDDAYEWAIT TFLEGMNDKK PCSVVTDGDK 360 SMRKAIQKLL PNARHRLCSW HLECNANTNV KDKAFLDAFK GCMFMNCTPD QFELKWIEMV 420 KKFDLTSNAW VQKMHRRKEL WAMAYLRGSF FAGMRSTQRC EKMNHVLKMY LTPKLKLYEH 480 IRSFEISIAW LRHEESRNRS ETEHTDLLPA TKMHSLERHA AELYTRKTFL MVREEMKMQG 540 MYCRYNGIDD GVQCIHFLEH SYLKIEYRVQ YNRFTGEMRC SCLKMETQGL PCCHMFRIML 600 FEHLDKIPEN CILKRWTRKA KECLMLEDDT SNGSIRLTEM ARYAKLISGC NNLCFHAAKT 660 LEGFRRVEDM ITTETVHVKE VQLRAEKLPI QSMTPTVSKK FGVLDPPSDR QARGAVAKGK 720 RRQQEHRMCG NCMLYLLP

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence

MESWEDEIGR RHLVELDEEM DEESDDCEYV NPSRIEAEDD VEEEPNKEGN DEEVYEVVHN  60
MSHYDVMTMQ FETVKDAECF YLNYGKAIGF GIRRGYKKKH PDGYVRYRAW LCNREGKRDD  120
KHIERQDRQR EPKAMTRVNC KACLKIRYDL KIKKYVVSGF ISEHTHRLAS PESVAFMRSH  180
RRVSDGAYAQ AHTLRRIGVG ASQIVKLFAL QAGGYGNIGF TPKDLYNKLH SKRMEEIAGG  240
DAEAALAYMA GKNDGDLNFY FKYQLNDEGR LIRLFWADSR SRDDYRCFGD VLVFDSTYNT  300
NEYDFPLVVF CGVNNHYSTC IFGCALLVGE GDDAYEWAIT TFLEGMNDKK PCSVVTDGDK  360
SMRKAIQKLL PNARHRLCSW HLECNANTNV KDKAFLDAFK GCMFMNCTPD QFELKWIEMV  420
KKFDLTSNAW VQKMHRRKEL WAMAYLRGSF FAGMRSTQRC EKMNHVLKMY LTPKLKLYEH  480
IRSFEISIAW LRHEESRNRS ETEHTDLLPA TKMHSLERHA AELYTRKTFL MVREEMKMQG  540
MYCRYNGIDD GVQCIHFLEH SYLKIEYRVQ YNRFTGEMRC SCLKMETQGL PCCHMFRIML  600
FEHLDKIPEN CILKRWTRKA KECLMLEDDT SNGSIRLTEM ARYAKLISGC NNLCFHAAKT  660
LEGFRRVEDM ITTETVHVKE VQLRAEKLPI QSMTPTVSKK FGVLDPPSDR QARGAVAKGK  720
RRQQEHRMCG NCMLYLLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	349	364	KKPCSVVTDGDKSMRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-98	FAR1 family protein