PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174632.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 696aa MW: 77920.4 Da PI: 5.2024

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174632.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	57.6	2.5e-18	535	582	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI RWP Rk +++ XP_027174632.1 535 ITREVLEQNSMRKLEDAAKNIGVSRSTLKRICREYGIGRWPPRKERKV 582 899*****************************************7775 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MWCQCLVQFW GLVKTGDKTY LTTCDLPFAL QYYPFNGSPV TSLLKLCEYR KHCLEYLIPV 60 DEDDDGDEVQ LIIGPPGRVF RSGLPEYAWN VGEYTSREYP QRDYAVGRVM RYWTLPIYHH 120 PTRHLPIGVL EIVSPSDFVG LPRYRVLENL QNLLLVVNLT TTCVSLLTEV NSCQRGEIAI 180 IDEASSKVRK ICGLGYGVTK TWTISGEKLS SHGGVDFIQK GQGVVGKAFS SKSACFCRDI 240 RQLSITEYPL VPNARYWKSS TCFAVCLQSS CSNNCIYVLE FFIPTYEKHS FGDLRTLLNS 300 LMESLKERLG SSFKIASGQE LGKKLAVEVI KVSPEDEFDS FEICSTTGIE STPRLGEVQG 360 GEGMMQLDFS SQQVDAANGS MNGIHEQQNG SVGSTPRLAK AQGGEGMMQL DFSSQQVDTA 420 NACINGVHGQ QNGIVGSPPR REPTQDFINI SYQELNLAGV DVAHNSMDGI YEQQNGIVGS 480 TTGQELVQNM VSIAHDEPIV EDPERDDAII EQSSNEVTNL KMQEPSCTLK SDLGITREVL 540 EQNSMRKLED AAKNIGVSRS TLKRICREYG IGRWPPRKER KVNQVFAKQK VVQPATEYIE 600 ENHQSDATRL EDDISMWVIK AKYQEDKIKF ELSSSAHKID LEKNIAQRFK LSLGSFKIKY 660 QDELNDWILV TCDTDLSFCM KTLSKLGRTT IEMLVS

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MWCQCLVQFW GLVKTGDKTY LTTCDLPFAL QYYPFNGSPV TSLLKLCEYR KHCLEYLIPV  60
DEDDDGDEVQ LIIGPPGRVF RSGLPEYAWN VGEYTSREYP QRDYAVGRVM RYWTLPIYHH  120
PTRHLPIGVL EIVSPSDFVG LPRYRVLENL QNLLLVVNLT TTCVSLLTEV NSCQRGEIAI  180
IDEASSKVRK ICGLGYGVTK TWTISGEKLS SHGGVDFIQK GQGVVGKAFS SKSACFCRDI  240
RQLSITEYPL VPNARYWKSS TCFAVCLQSS CSNNCIYVLE FFIPTYEKHS FGDLRTLLNS  300
LMESLKERLG SSFKIASGQE LGKKLAVEVI KVSPEDEFDS FEICSTTGIE STPRLGEVQG  360
GEGMMQLDFS SQQVDAANGS MNGIHEQQNG SVGSTPRLAK AQGGEGMMQL DFSSQQVDTA  420
NACINGVHGQ QNGIVGSPPR REPTQDFINI SYQELNLAGV DVAHNSMDGI YEQQNGIVGS  480
TTGQELVQNM VSIAHDEPIV EDPERDDAII EQSSNEVTNL KMQEPSCTLK SDLGITREVL  540
EQNSMRKLED AAKNIGVSRS TLKRICREYG IGRWPPRKER KVNQVFAKQK VVQPATEYIE  600
ENHQSDATRL EDDISMWVIK AKYQEDKIKF ELSSSAHKID LEKNIAQRFK LSLGSFKIKY  660
QDELNDWILV TCDTDLSFCM KTLSKLGRTT IEMLVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-21	Nin-like family protein