PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174640.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 1055aa MW: 118956 Da PI: 4.9399

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174640.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	53.5	4.8e-17	894	942	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ ++kdAAk L+v+ ++LKriCR +GI+RWP Rk +++ XP_027174640.1 894 GITREVLEQNSWRNLKDAAKVLQVSRSTLKRICRDFGINRWPPRKARKV 942 6999*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1055 aa Download sequence
MVQTSRNYVN IGSTVWDYTI REYPQRDYAV GCFRGYWALP IYHHPTRHLP IGVLEIVSPY 60 GVAVLHRRRV LEKLQNLPRE VNLTTTCVSL PAEVNSCQDG EIAIIDQALS KVRQIRGLGY 120 ADTETWTISG EILSSREGVD FIRKGQGVVG RAFSSKSACF CRDIRQLSIT DYPLVPIARS 180 YKYSACFAVC LQSPCPKNCI YVLEFFLHMN EKDEDEEDPR TLLNSLMETL KECLGISFKI 240 ASGQELGQKL TVEVIKVSRE DEFGSFVICS TTVIGGEGMT KLQMAPFSVE GLGPCELISS 300 HSFNNYYHQW VFWSTCGNDE GGCGKPHHLS ATADGAVFTD DIKCCLQLVM ETLIPCHCLV 360 QFWGLVKTRD KTYLTTRDQP FALHYGHFNG GDAKKLCEYR KHCLEYLFPV DEDDDDHEIG 420 PPGRVFRSGL PEFAWHVADY TIREYPQRDY AVGRVKEYWA LPIYHHPTQH LPIGVLEIVS 480 PSDFNELPRR WVLEKLQNLP WELNLTTTCV SLPAEVNSCQ DGEIARIEQA LNKVSEMCGL 540 YDAESWTISG EILSSREGVD FIRKGQGVVG RAFSSKSACF CRDVRQLSIT EYPMVPRARH 600 LKRSACFAVC LQSPCPNKCI YVLEFFLPMY EEVEDEADYG EDEDEDEADY GEDEDEDKVD 660 YGDPRTLLHS LMETLKECLG SSFMIASGQE LGQKLTVEVI KISSKDEYDS FEICNTTGIE 720 STPRLGEVRG EGMMQLDFSS QQVDAANGIH EQQNGSVGST PRLAKAQGGE GMTQVDFSPQ 780 QVDTTSAYMN GVHGQQSGIS GSPPRTEHTQ ELTVGVDVVH NSLNGIYEQN NGIVESPHRQ 840 ELPQNIENIA HDEGNMEIDV ANPERGGASI EPSDREVINI KKQKSSYTLK SELGITREVL 900 EQNSWRNLKD AAKVLQVSRS TLKRICRDFG INRWPPRKAR KVNQASAEQR VVQPSTENTE 960 ERHRPDTTRL GDDSSIWVKA EYQGDTMKFR LPLSAHKFNL EEKVAQRLNL PIGSFKIQYQ 1020 DEENEWIWIA CDEDLSTCTS TLSSLGRTTI RMLVR

Sequence ? help Back to Top

Protein Sequence Length: 1055 aa Download sequence

MVQTSRNYVN IGSTVWDYTI REYPQRDYAV GCFRGYWALP IYHHPTRHLP IGVLEIVSPY  60
GVAVLHRRRV LEKLQNLPRE VNLTTTCVSL PAEVNSCQDG EIAIIDQALS KVRQIRGLGY  120
ADTETWTISG EILSSREGVD FIRKGQGVVG RAFSSKSACF CRDIRQLSIT DYPLVPIARS  180
YKYSACFAVC LQSPCPKNCI YVLEFFLHMN EKDEDEEDPR TLLNSLMETL KECLGISFKI  240
ASGQELGQKL TVEVIKVSRE DEFGSFVICS TTVIGGEGMT KLQMAPFSVE GLGPCELISS  300
HSFNNYYHQW VFWSTCGNDE GGCGKPHHLS ATADGAVFTD DIKCCLQLVM ETLIPCHCLV  360
QFWGLVKTRD KTYLTTRDQP FALHYGHFNG GDAKKLCEYR KHCLEYLFPV DEDDDDHEIG  420
PPGRVFRSGL PEFAWHVADY TIREYPQRDY AVGRVKEYWA LPIYHHPTQH LPIGVLEIVS  480
PSDFNELPRR WVLEKLQNLP WELNLTTTCV SLPAEVNSCQ DGEIARIEQA LNKVSEMCGL  540
YDAESWTISG EILSSREGVD FIRKGQGVVG RAFSSKSACF CRDVRQLSIT EYPMVPRARH  600
LKRSACFAVC LQSPCPNKCI YVLEFFLPMY EEVEDEADYG EDEDEDEADY GEDEDEDKVD  660
YGDPRTLLHS LMETLKECLG SSFMIASGQE LGQKLTVEVI KISSKDEYDS FEICNTTGIE  720
STPRLGEVRG EGMMQLDFSS QQVDAANGIH EQQNGSVGST PRLAKAQGGE GMTQVDFSPQ  780
QVDTTSAYMN GVHGQQSGIS GSPPRTEHTQ ELTVGVDVVH NSLNGIYEQN NGIVESPHRQ  840
ELPQNIENIA HDEGNMEIDV ANPERGGASI EPSDREVINI KKQKSSYTLK SELGITREVL  900
EQNSWRNLKD AAKVLQVSRS TLKRICRDFG INRWPPRKAR KVNQASAEQR VVQPSTENTE  960
ERHRPDTTRL GDDSSIWVKA EYQGDTMKFR LPLSAHKFNL EEKVAQRLNL PIGSFKIQYQ  1020
DEENEWIWIA CDEDLSTCTS TLSSLGRTTI RMLVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-35	Nin-like family protein