PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174643.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 647aa MW: 72312 Da PI: 4.8221

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174643.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.3	7.4e-19	478	525	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ + ++ dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ XP_027174643.1 478 ITREVLEQNSKRKLVDAAKHIGVSRSTLKRICREYGIHRWPPRKARKV 525 899*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence
MVQSSNEDDD DDKIGPPGRV FRSGLPEYAE DVADYSIREY PQRDYAVNRV EEYWALPIYH 60 HPTRHLPIGV LEIVSPSDFI GLPRYRVLEK LQNLPREVNL TTTCVSLPAE VNSCQDGEIA 120 IIDQALSKVR QISGLGYAES WTTSREILSS REGVDFIRKG QGVVGRAFSS KSACFCGDIS 180 QLSITDYPLV VQARPCEHSA CFAVCLQSSC PNKCIYVLEF FLPMYGEVED EADYGDPRTL 240 LNRIMGTLKE HLQSSFKIAS GQELGQKLTV EVIKVSPEDE FDSFEICSTT GIESQPRLEE 300 VQGGDGMMHL DLSSQQVDAA NGSMNGIHEQ QNGSVGSTPR LAKAQGGEGM MQVDFSSQQV 360 DTANAYINGV HAQQSGIVGS PPRPEHEQGF VNISYQELNL AGFDVAHNSM NGVYERQHGI 420 VRSSTGQELV QNVVSIADYE PIVEDPERDD ASIEQRNNEV TNLKVQKPSS TLKIELGITR 480 EVLEQNSKRK LVDAAKHIGV SRSTLKRICR EYGIHRWPPR KARKVNQAFA EQKIVQPSTE 540 DAHEPHQSGP ARLEDDNGMW VKAEYQGFMI KFRLPFSARK IDLEGKVAQR LNLPVGSFKI 600 EYQDEDDDRI RITCDEDLRT SMSTLSSLGR TTIKMYIVED SPNRRDE

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence

MVQSSNEDDD DDKIGPPGRV FRSGLPEYAE DVADYSIREY PQRDYAVNRV EEYWALPIYH  60
HPTRHLPIGV LEIVSPSDFI GLPRYRVLEK LQNLPREVNL TTTCVSLPAE VNSCQDGEIA  120
IIDQALSKVR QISGLGYAES WTTSREILSS REGVDFIRKG QGVVGRAFSS KSACFCGDIS  180
QLSITDYPLV VQARPCEHSA CFAVCLQSSC PNKCIYVLEF FLPMYGEVED EADYGDPRTL  240
LNRIMGTLKE HLQSSFKIAS GQELGQKLTV EVIKVSPEDE FDSFEICSTT GIESQPRLEE  300
VQGGDGMMHL DLSSQQVDAA NGSMNGIHEQ QNGSVGSTPR LAKAQGGEGM MQVDFSSQQV  360
DTANAYINGV HAQQSGIVGS PPRPEHEQGF VNISYQELNL AGFDVAHNSM NGVYERQHGI  420
VRSSTGQELV QNVVSIADYE PIVEDPERDD ASIEQRNNEV TNLKVQKPSS TLKIELGITR  480
EVLEQNSKRK LVDAAKHIGV SRSTLKRICR EYGIHRWPPR KARKVNQAFA EQKIVQPSTE  540
DAHEPHQSGP ARLEDDNGMW VKAEYQGFMI KFRLPFSARK IDLEGKVAQR LNLPVGSFKI  600
EYQDEDDDRI RITCDEDLRT SMSTLSSLGR TTIKMYIVED SPNRRDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	4e-32	Nin-like family protein