PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027174646.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 251aa    MW: 27580.7 Da    PI: 5.783
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027174646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS34.92.1e-1118424986150
            GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgsp 150
                     +  P+  +s++ta   I   v++++rvH i f++ +G +W  ++q +a++   +   l+iT+vg +
  XP_027174646.1 184 QENPFSLVSQFTAIGSIRATVATARRVHLINFGLDNGSHWTLIMQDFAAQYdYPIELLKITAVGTS 249
                     55799*******************************************887467779******984 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MDNIGVEVEK PPLISYLAQV KKESSFMPLT LLELLKQYSA KVKRLREGNL KELNTVKPTN  60
SSGHQALSTA GIMELARAQL FVLNSQKADV LSSVASCIGA QSALGSEFSE DLGLAILLQA  120
AAEYVVNQQY VYSRKLLNMS LREKIDQECG MVASLEDLEG ETRRPIDEKL ALVSLQPGMM  180
ASQQENPFSL VSQFTAIGSI RATVATARRV HLINFGLDNG SHWTLIMQDF AAQYDYPIEL  240
LKITAVGTSN R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.14e-07GRAS family protein