PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027174647.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 200aa    MW: 23311.2 Da    PI: 5.3329
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027174647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS88.21.4e-272153159315
            GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                     eet + L+ fA+++ +pf fn+ v+++l+dl+ ++++++ +E++aV l  +l +ll+ +  le    +++ ++ +l+P+v+vv e ea++n++ F
  XP_027174647.1   2 EETVKWLSAFADSISLPFTFNI-VVSDLKDLKEDMFKLEADEVVAVYLDRRLWTLLAWPNYLE----ALIAMISKLKPRVMVVKEMEASTNNPIF 91 
                     788899***************9.7999****************************95555555....5*************************** PP

            GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                     lerf eal ++s +f+s++  + ++   r+  E+++ ++ i+n++++e   ++  +e++++W
  XP_027174647.1  92 LERFHEALIFFSGMFESIKDCMDNHIFYRKLTEEVYCRNMIRNIITAEVLLQFIWMENASSW 153
                     ******************99998888*********************998888888888888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MEETVKWLSA FADSISLPFT FNIVVSDLKD LKEDMFKLEA DEVVAVYLDR RLWTLLAWPN  60
YLEALIAMIS KLKPRVMVVK EMEASTNNPI FLERFHEALI FFSGMFESIK DCMDNHIFYR  120
KLTEEVYCRN MIRNIITAEV LLQFIWMENA SSWGGKEPHL SQYLPGNSSM TQSDQRLLQD  180
LKVRLFAKCF VGHCTLSSVF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-17GRAS family protein