PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174792.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 218aa MW: 24693.6 Da PI: 8.6861

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174792.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.2	4.5e-11	41	88	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RRd+i ++f L l+P + kKl+K+++ e +++++k+Lq XP_027174792.1 41 QEHLLAERKRRDKISQRFVCLSALVPGL-----KKLDKSSVIEGTIKHLKELQ 88 568899********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MLPLNFSTGC PSCFEETDQY AAMRYQLPVK RAGTRTPSQA QEHLLAERKR RDKISQRFVC 60 LSALVPGLKK LDKSSVIEGT IKHLKELQDC LKALEEGRNR EHDQELVVYK KKPCIRFHQE 120 ASLSSFDQSL TNLEVRILKG NVLVKACCRR RSGFTDDFLH EMEKLDLVIE TSSFMPFADN 180 LLAISAAAKM NDGFSLTEEN LANNISRAIL KLIHPKLG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	52	ERKRRD
2	48	53	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	4e-38	bHLH family protein