PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174838.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 315aa MW: 33568.6 Da PI: 8.6858

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174838.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.5	1.5e-13	116	160	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky XP_027174838.1 116 PWTEEEHRSFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 160 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MGRKCSHCGN IGHNSRTCTA YSRGNISVMA AGLRLFGVQL DVSCNSAPSS SNSNSIAMKK 60 SFSLDCLSSS TTSSPSPSSS LSSSRISISE NSDKISIGYL SDGLLGRPQE RKKGVPWTEE 120 EHRSFLVGLE KLGKGDWRGI SRNFVTTRTP TQVASHAQKY FLRQASLNKK KRRSSLFDMV 180 GSKNAARHQV FDLSFELNND TTSATCLSSK ASSDLDTAAP LLDLNSFAVD TTTNHQACIE 240 VQEGSSSHHM DIDSMSIWPA ASGSSSYQLS NISSITSTTG APDLELTLAA PKTAAQNNPP 300 PPPASILIMG PISVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	173	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	3e-59	MYB_related family protein