PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027175136.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 891aa MW: 99123.8 Da PI: 6.9648

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027175136.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.9	1.8e-18	298	398	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_027175136.1 298 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVQGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 390 99************************555567778***********99899999999.*******************876.8888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++++ XP_027175136.1 391 LLMGFRKA 398 88888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 891 aa Download sequence
MDSKVCMNQQ CTSSSSSSSI DLKRGWPLRS GGFATLCHHC GIAYEQLVFC DKFHSNDSGW 60 RECTTCGKNL TGEKNKDCRV FSADDGGGKQ FTTVGSQSNV GITDKMKLVQ FGDDAGSSDQ 120 SQLFLSQTDD RIESLGQRKM KENFLTSGEF GSPFLSVLNQ TSVEAAQNAQ LNEYKEYMPI 180 KDTHGSSVQT NLTISPPATS GDKIFLPAVV AEERPLNKKS SSFLQGSRSR HLLPKPVKSI 240 MAAGLEANVS SLTQLRVARP PVEGRIKNQL LPRYWPRITD QELRQISGDS NSTVVPLFEK 300 VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLRIQDV QGKEWVFQFR FWPNNNSRMY 360 VLEGVTPCIQ SMQLQAGDTV TFSRMDPEGK LLMGFRKASL MQTCSDFPSQ DNKHLSSIPK 420 GSFSSEPFFL PGADNLHSAN SQSALLDSVK GSGVFPLSAL SKHFSAVEFG WHIAEMNGEK 480 TLDGIFPSSM LVPERKRSRN IGSKSKRLLI DSQDAFELKL SWEELQDMLC PPPCVKPSTV 540 AIEDHEFEEY DQPPVFGKKS IFTMRQSGEQ EQWAQCDSCL KWRRLPVNVL LPPKWTCQEH 600 TWALSRPSCS GPEDLSPHEL ESLLKMSKEH KKQKIASGLK SAHEHESSDP DGLGNSKAVR 660 GDTSGTSAAS IATTTKHPRH RPGCSCIVCI QPPSGKGKHK PTCTCNVCMT VKRRFKTLMM 720 RKKKRQSERE AEIAQRNKFD WVSKEEAEVE SYQQLVIPHD SLENHKRLGS ESEFLSQSNK 780 QSEKLEEIGK EQLDLNCHPD RENLQQSSSR VSMVSLLQEA SLPLQTYLKQ NGLTSLVSDQ 840 RVSSGSNVLL PQVTRESEVQ FDEDQCLSHE IQEQEVKEEL SETDQAGNDP S

Sequence ? help Back to Top

Protein Sequence Length: 891 aa Download sequence

MDSKVCMNQQ CTSSSSSSSI DLKRGWPLRS GGFATLCHHC GIAYEQLVFC DKFHSNDSGW  60
RECTTCGKNL TGEKNKDCRV FSADDGGGKQ FTTVGSQSNV GITDKMKLVQ FGDDAGSSDQ  120
SQLFLSQTDD RIESLGQRKM KENFLTSGEF GSPFLSVLNQ TSVEAAQNAQ LNEYKEYMPI  180
KDTHGSSVQT NLTISPPATS GDKIFLPAVV AEERPLNKKS SSFLQGSRSR HLLPKPVKSI  240
MAAGLEANVS SLTQLRVARP PVEGRIKNQL LPRYWPRITD QELRQISGDS NSTVVPLFEK  300
VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLRIQDV QGKEWVFQFR FWPNNNSRMY  360
VLEGVTPCIQ SMQLQAGDTV TFSRMDPEGK LLMGFRKASL MQTCSDFPSQ DNKHLSSIPK  420
GSFSSEPFFL PGADNLHSAN SQSALLDSVK GSGVFPLSAL SKHFSAVEFG WHIAEMNGEK  480
TLDGIFPSSM LVPERKRSRN IGSKSKRLLI DSQDAFELKL SWEELQDMLC PPPCVKPSTV  540
AIEDHEFEEY DQPPVFGKKS IFTMRQSGEQ EQWAQCDSCL KWRRLPVNVL LPPKWTCQEH  600
TWALSRPSCS GPEDLSPHEL ESLLKMSKEH KKQKIASGLK SAHEHESSDP DGLGNSKAVR  660
GDTSGTSAAS IATTTKHPRH RPGCSCIVCI QPPSGKGKHK PTCTCNVCMT VKRRFKTLMM  720
RKKKRQSERE AEIAQRNKFD WVSKEEAEVE SYQQLVIPHD SLENHKRLGS ESEFLSQSNK  780
QSEKLEEIGK EQLDLNCHPD RENLQQSSSR VSMVSLLQEA SLPLQTYLKQ NGLTSLVSDQ  840
RVSSGSNVLL PQVTRESEVQ FDEDQCLSHE IQEQEVKEEL SETDQAGNDP S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	712	723	KRRFKTLMMRKK
2	712	725	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein