PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027175684.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 427aa    MW: 46456.9 Da    PI: 8.2022
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027175684.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12326125
                    --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                    +k elCr+f+r G C+yGdrCkF H
  XP_027175684.1  3 PKKELCRNFLR-GSCQYGDRCKFLH 26
                    699********.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    
MPPKKELCRN FLRGSCQYGD RCKFLHAAQT PARQNPFGLG MQTGNQFQHA NLQQQKPNPF  60
GFGVQNSSQP RGAGDFSSKQ NQFKAFENKW TRSSQANTGN SAASRQPDNQ PPSHKCTDPE  120
SCKRQILEDF ENERPLWKLT CYGHSKYGPC DIVGDISYEE FRATAYDDAK RGLSLQSIVE  180
RERNLLNSKL VEFDSLLRSP YKGSSNSAIG LQSPFPISVR NTSVSAQNSN PPSFSSFSQL  240
GTSLGGGATA SPNNFFGQQH AFQSTSQTSS TFKMTNSPFQ NSGFGSQLPS QTLQSPFASG  300
SASFGNRSVN TLQNPLFASP VSAQTSTLSN VSNNNMKSGF ASFSNSSVQN PFSTSTVSSQ  360
SSIFGDNTNA LFSVNANVNE VGLSAGNIDL KLATPEENLN GDNSIWRKEE WGIGEIPEAE  420
PPVEYCR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.13e-75C3H family protein