PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027175745.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 786aa MW: 86359.8 Da PI: 9.4988

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027175745.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31	5.7e-10	30	76	4	41
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg.........kgRtlkqck 41 W t+Ed+llv+av+++G+++W+++a +++ + +t+ +c+ XP_027175745.1 30 WGTWEDLLLVCAVNRYGTNSWESVALEIQkrstspflsLSLTPRNCQ 76 *****************************655555555555555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence
MAGPNGSTGD YGNKSEAPAE RLDSDDAAHW GTWEDLLLVC AVNRYGTNSW ESVALEIQKR 60 STSPFLSLSL TPRNCQMKYL DLTRRFLLKH DPRNTDNDYK DDDVEAADHD GSIISTDESV 120 PLLEELRKLR VAELRRELER YDLSIVTLQS KVKKMKEERE RCSTESEIRE EKASVLRKSE 180 EAEAPPERDA SEDKVKVIMD ELEKSPSSMA NKKDEQSVNG SVPKDGRVGE IEAGRDEVKV 240 KEPGRIGEGH EEPVRTMEDK LVKEEDSGYG SSDSVEREYR KPGPESVPNE VKVEPESVSH 300 SPELVESVAE SKDGGGDGVC GDEEATTKEC NSDVQSSATK SRRDGENDDV LPGSTKNLDL 360 QNDNRSPSVK LEASVESQPL IDFLDHMKGH KLGSLFLRRL DSQEAPNYKS LIRQHVDLET 420 VQRRVKEGIY SDSNLKFFRD LLLLVNNAMV FFGKNTPEFL AAMELRHLIA NEMARRNAKS 480 SGSSSEKQAS LQKASLPDKG SSEPSESLLR KPKLGGQLIV CRKRSSIAAK ASASSSASDK 540 KRDQNKMPTE DSAGLDSKHP SRRQQPARAE EPRITKKRSA DRFASVSTSL KKNAKNGTGT 600 NSKQMSGTNL EKNNKGKGGS SSQQPDPRCE NKNNQSSADL KKRSAANFLN RMKQSSSSNN 660 STLLDALKGT PLTASNNSRG GSELKKNENS KASGGSNLKK NEHGKGSGGS EHKKNENVKW 720 SGKKAQVSTR SSDAKQAKEK TIPATKSLGR PLNKGAAPPT PSGKRGRGDR ESESAASKQQ 780 RKKPRK

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence

MAGPNGSTGD YGNKSEAPAE RLDSDDAAHW GTWEDLLLVC AVNRYGTNSW ESVALEIQKR  60
STSPFLSLSL TPRNCQMKYL DLTRRFLLKH DPRNTDNDYK DDDVEAADHD GSIISTDESV  120
PLLEELRKLR VAELRRELER YDLSIVTLQS KVKKMKEERE RCSTESEIRE EKASVLRKSE  180
EAEAPPERDA SEDKVKVIMD ELEKSPSSMA NKKDEQSVNG SVPKDGRVGE IEAGRDEVKV  240
KEPGRIGEGH EEPVRTMEDK LVKEEDSGYG SSDSVEREYR KPGPESVPNE VKVEPESVSH  300
SPELVESVAE SKDGGGDGVC GDEEATTKEC NSDVQSSATK SRRDGENDDV LPGSTKNLDL  360
QNDNRSPSVK LEASVESQPL IDFLDHMKGH KLGSLFLRRL DSQEAPNYKS LIRQHVDLET  420
VQRRVKEGIY SDSNLKFFRD LLLLVNNAMV FFGKNTPEFL AAMELRHLIA NEMARRNAKS  480
SGSSSEKQAS LQKASLPDKG SSEPSESLLR KPKLGGQLIV CRKRSSIAAK ASASSSASDK  540
KRDQNKMPTE DSAGLDSKHP SRRQQPARAE EPRITKKRSA DRFASVSTSL KKNAKNGTGT  600
NSKQMSGTNL EKNNKGKGGS SSQQPDPRCE NKNNQSSADL KKRSAANFLN RMKQSSSSNN  660
STLLDALKGT PLTASNNSRG GSELKKNENS KASGGSNLKK NEHGKGSGGS EHKKNENVKW  720
SGKKAQVSTR SSDAKQAKEK TIPATKSLGR PLNKGAAPPT PSGKRGRGDR ESESAASKQQ  780
RKKPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	2e-60	MYB_related family protein