PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027176298.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 432aa MW: 48431.3 Da PI: 8.7006

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027176298.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.9	9.6e-25	82	126	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_027176298.1 82 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEQ 126 79****************************************997 PP
2	QLQ	55.1	2.3e-19	15	46	2	33
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FTa+Q+q+L++Q+l++Ky++++ PvPp+Ll XP_027176298.1 15 PFTASQWQELEHQALIFKYMVSGTPVPPDLLY 46 8*****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MMSATTSARS SSRFPFTASQ WQELEHQALI FKYMVSGTPV PPDLLYTVRR SLDSSLSSKL 60 LFHQPQLGWN SCFQMGFGRK IDPEPGRCRR TDGKKWRCSK EAYPDSKYCE RHMHRGRNRS 120 RKPVEQQLIT TPIPPPPIIS PSSISNNNTS STATPPTAIP ITSISKNHPP SPSSPTSHHS 180 FSCLTSLATS SESQPHHHHH HHNHGTGINQ PGYALHHPLL YPHSSCVRPP GTSHDRISSE 240 ENSTNYFLGS GPYSQASKGY SSYGQGGKEE VDEHAFFCEA SGTVRNLSGG SSVVDHDGTS 300 SWQLAPLTMG SPSGSHLKQR SSYSVSNGGH SSYLQLQSLN HDNDYNTTSR QQKQASQQQY 360 YGLGDRDDHQ NKRVMHRFFD EWPPKDNKDS CWLDNNDHHD HKLSKIQLSI SMPNASSHHD 420 FFMTRNEKMR SE

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MMSATTSARS SSRFPFTASQ WQELEHQALI FKYMVSGTPV PPDLLYTVRR SLDSSLSSKL  60
LFHQPQLGWN SCFQMGFGRK IDPEPGRCRR TDGKKWRCSK EAYPDSKYCE RHMHRGRNRS  120
RKPVEQQLIT TPIPPPPIIS PSSISNNNTS STATPPTAIP ITSISKNHPP SPSSPTSHHS  180
FSCLTSLATS SESQPHHHHH HHNHGTGINQ PGYALHHPLL YPHSSCVRPP GTSHDRISSE  240
ENSTNYFLGS GPYSQASKGY SSYGQGGKEE VDEHAFFCEA SGTVRNLSGG SSVVDHDGTS  300
SWQLAPLTMG SPSGSHLKQR SSYSVSNGGH SSYLQLQSLN HDNDYNTTSR QQKQASQQQY  360
YGLGDRDDHQ NKRVMHRFFD EWPPKDNKDS CWLDNNDHHD HKLSKIQLSI SMPNASSHHD  420
FFMTRNEKMR SE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-48	GRF family protein