PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027176495.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HSF
Protein Properties Length: 339aa    MW: 37264.8 Da    PI: 6.5338
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027176495.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35121032102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F++k+y++++d++++ li w + +nsf+v+d+ +f++k+Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         w F++++F +g+++ll++
  XP_027176495.1  12 FVMKTYQMVNDPSTDGLIAWGKANNSFIVIDPLDFSQKILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WAFANEWFLRGQTHLLKN 97 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k+
  XP_027176495.1  98 ISRRKH 103
                     ***985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MEAANNNIIA PFVMKTYQMV NDPSTDGLIA WGKANNSFIV IDPLDFSQKI LPAYFKHNNF  60
SSFVRQLNTY GFRKVDPDRW AFANEWFLRG QTHLLKNISR RKHCSRNSSN SRAEDDEDDE  120
GIIMELARLK QEQKELDLQL SRMNKRLEAT ERRPQQMMAF LSKVAQDPEI LPRMMLEKER  180
TKRLNIASGD KKRRIMMISS TSPSASVSSP PSSSGMPLTS SSVKSEEEED DANLDVDKYC  240
HFSSSPETPS SAWFSQRQVL GRSVIAQESS NSGGNISSSL SSGSSAGSSG STVAPPLDGV  300
PVCDATFGGD ISYVGRAAAV GEAVSPQPPY PFSLLGGGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-84HSF family protein