PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027176795.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 281aa MW: 31811.3 Da PI: 6.9441

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027176795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++++ G g+W++ +++ g+ R++k+c++rw +yl XP_027176795.1 14 KGPWTKEEDQILISYINENGRGNWRALPKKAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.1	7.2e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ lG++ W++Ia+t++ gRt++++k+ w+++l XP_027176795.1 67 RGNFTQEEEDTIIKLHQALGNR-WSAIAATLP-GRTDNEIKNVWHSHL 112 89******************.*****.*********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MGRAPCCEKM GLNKGPWTKE EDQILISYIN ENGRGNWRAL PKKAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TQEEEDTIIK LHQALGNRWS AIAATLPGRT DNEIKNVWHS HLKKRLIPEQ 120 DHDQHHQGQA VRKTKPEQGT NKALSVEKPK LHCQDSNSSP VKIIVSKQER GTNNQSSSLQ 180 YSSSDDISSS LSFTDATTTT TIPDNPTEIY FTNSGDGDSV SNKHQELDQD IWHDVVSSQD 240 HSLSPVLHRG GCGFNPFTND DINFWCDLFT RTEDISHLLE F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	3e-71	MYB family protein