PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027177039.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Nin-like
Protein Properties Length: 233aa    MW: 27048.3 Da    PI: 6.2656
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027177039.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK59.37.5e-1963111452
          RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     +i+ e+l+++   +++dAAk++gv+ ++LKriCR+yGI+RWP  k +++
  XP_027177039.1  63 RITREVLEQNSRRKLEDAAKNIGVSRSTLKRICREYGIHRWPPHKARKV 111
                     799***************************************9887775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MNGIYEQEDG IVRSSTGEEL VQNMVSVAHD EPERDGASID QRDNEMISIK MQKSSCTLKS  60
DLRITREVLE QNSRRKLEDA AKNIGVSRST LKRICREYGI HRWPPHKARK VNQAFAEQKI  120
VQPSTEDTHE HHQSNATRLE DDNGMWVKAE YQGFMIKFRL PFSARKIDLE EKVAQRLNLA  180
VGSFKIEYQD EDDDRIRITC DEDLRTFMSS LSSLGRTTIK MYIVEDNPNR RDQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.16e-14Nin-like family protein