PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027177095.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 317aa    MW: 35331.2 Da    PI: 6.7668
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027177095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52.1e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl
   XP_027177095.1 14 KGPWSPEEDAKLKEYIEKSGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.62.6e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
   XP_027177095.1  69 GDFTDDEDRIICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KSGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGD FTDDEDRIIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKIMGS  120
HKKCHQPSPY ASPYSGFEPA SITSSPFSAP SPSISSVYHN YHTTTQFRSL SGYETFSSTP  180
PSLLNANCSS TSTGFQEVQH MGGSMHSYLV QDSSLLRFGG EASCSSSDGS STNQNSYGKE  240
VEHDLQNYLC STGVDHENQK IMINSDVTIE YADDQKPCSE NPLDYSLEEI KQLISTNLCN  300
NFFVDENKTD EKVAYYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-78MYB family protein