PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177114.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 466aa MW: 48245.7 Da PI: 6.9663

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177114.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.5e-12	250	295	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_027177114.1 250 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 295 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MQPGSSSSRE MQAMNSLLNQ QLHDLQNGQQ HHHHHFDSTT SSHDDFLEQM LSSISSSSWP 60 APDLIKTQPP WDPLSSAAAS QTPLGSLEDQ SVLLASKLRQ HQIGGAKALM LHQQLMLPRG 120 LAGNGLRSPP GPNGGLLAMP LNLAGNGDQN EVIVDGSPFK SANPGNDASV QALYNGFTGS 180 LGQPSTQPQH FHHPQGGAMQ AQNFGAQAAQ AMNQAAASGS MGTAGGGGMA AAQPRQQRVR 240 ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV 300 LSMSRLGGAV APLVADMSSE GGGDCGNGRS SNGTQTASSS NNNNNDSMTV TEHQVAKLME 360 EDMGSAMQYL QGKGLCLMPI SLATAISTAT CHSRNPMHPG LNGNGANNPL LGLGGGANGN 420 GVGEAGGPSS PSMSVLTVQS ATMVNGGGGP GGEPSSVKDA ASVSKP

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MQPGSSSSRE MQAMNSLLNQ QLHDLQNGQQ HHHHHFDSTT SSHDDFLEQM LSSISSSSWP  60
APDLIKTQPP WDPLSSAAAS QTPLGSLEDQ SVLLASKLRQ HQIGGAKALM LHQQLMLPRG  120
LAGNGLRSPP GPNGGLLAMP LNLAGNGDQN EVIVDGSPFK SANPGNDASV QALYNGFTGS  180
LGQPSTQPQH FHHPQGGAMQ AQNFGAQAAQ AMNQAAASGS MGTAGGGGMA AAQPRQQRVR  240
ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV  300
LSMSRLGGAV APLVADMSSE GGGDCGNGRS SNGTQTASSS NNNNNDSMTV TEHQVAKLME  360
EDMGSAMQYL QGKGLCLMPI SLATAISTAT CHSRNPMHPG LNGNGANNPL LGLGGGANGN  420
GVGEAGGPSS PSMSVLTVQS ATMVNGGGGP GGEPSSVKDA ASVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	260	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	8e-57	bHLH family protein