PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177156.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 798aa MW: 90370.5 Da PI: 5.0835

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177156.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.2	7.6e-19	637	684	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ XP_027177156.1 637 ITHEVLEQNSMRKLEDAAKNIGVSRSTLKRICREYGIHRWPPRKERKV 684 899*****************************************7775 PP

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence
MAMEAQTFPS PPFSTEGLGP CELSYSHSFN NSFHQWTFWS TCGNDEGRCG KPHHLSAAAD 60 AAVIKTDIKW FMQLDTETIM WWRCLVQFWG LVRIGDKTYL TTCDQPFALC YYFDPDVKPL 120 CEYRKLCLEC LIPVDDDDDD DDDDDDDELI IGPPGRVFRS GIPEHAEDVH DYTSREYPQR 180 DYAVDRARYY WALPIYHPTR HLPVGVLEIV SPYVVGDLPR RQVLEKLQKV NLTTTCVRLA 240 EASSCEYLKY FFCLFLYCIT LAEALGYPFL LILLSHSSIG QDGEIAKIDK ALRNTKSIFK 300 RPKHGLYYPE TWTTSGEILS SREGVDFIRK GQGVVGRAFS SKSACFCRDI RQLSITDYPL 360 LLKARFLGYS SCFAVCLQSS CSNNCIYVLE FFLPTNEKDY GDCRIMLNSI MEKLKKYLRS 420 SFKIALGQEL GQKLTVEVIK VTPEDEFDSF EICSTAGIES TPRLGKVQGG EGMMQLDFSS 480 QQVDAANGSM NGGVESTPRL AKAHGGEGMM QVDFSSQQVD AANGYIKGVH GQQSGIVRSP 540 PRPEHAQDFV NISYQELNLA GVDVAHNSMN GIYEQQDGIV RSSIGQVLMQ NMVSIADYEP 600 IVEDPERDDA SIEQSGNEVT NLKMQEPSCT LKSDLGITHE VLEQNSMRKL EDAAKNIGVS 660 RSTLKRICRE YGIHRWPPRK ERKVNQVFAK QKVVQPAIEN VEEHHWLDAT RLEDDSSMWM 720 IKAKYQEDKI KFELSSSARK IDLENNIAQR FNLSGGSFKI MYQDELNDWI LITCDTDLSF 780 CMKTLHKLGR TTIEVLVS

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence

MAMEAQTFPS PPFSTEGLGP CELSYSHSFN NSFHQWTFWS TCGNDEGRCG KPHHLSAAAD  60
AAVIKTDIKW FMQLDTETIM WWRCLVQFWG LVRIGDKTYL TTCDQPFALC YYFDPDVKPL  120
CEYRKLCLEC LIPVDDDDDD DDDDDDDELI IGPPGRVFRS GIPEHAEDVH DYTSREYPQR  180
DYAVDRARYY WALPIYHPTR HLPVGVLEIV SPYVVGDLPR RQVLEKLQKV NLTTTCVRLA  240
EASSCEYLKY FFCLFLYCIT LAEALGYPFL LILLSHSSIG QDGEIAKIDK ALRNTKSIFK  300
RPKHGLYYPE TWTTSGEILS SREGVDFIRK GQGVVGRAFS SKSACFCRDI RQLSITDYPL  360
LLKARFLGYS SCFAVCLQSS CSNNCIYVLE FFLPTNEKDY GDCRIMLNSI MEKLKKYLRS  420
SFKIALGQEL GQKLTVEVIK VTPEDEFDSF EICSTAGIES TPRLGKVQGG EGMMQLDFSS  480
QQVDAANGSM NGGVESTPRL AKAHGGEGMM QVDFSSQQVD AANGYIKGVH GQQSGIVRSP  540
PRPEHAQDFV NISYQELNLA GVDVAHNSMN GIYEQQDGIV RSSIGQVLMQ NMVSIADYEP  600
IVEDPERDDA SIEQSGNEVT NLKMQEPSCT LKSDLGITHE VLEQNSMRKL EDAAKNIGVS  660
RSTLKRICRE YGIHRWPPRK ERKVNQVFAK QKVVQPAIEN VEEHHWLDAT RLEDDSSMWM  720
IKAKYQEDKI KFELSSSARK IDLENNIAQR FNLSGGSFKI MYQDELNDWI LITCDTDLSF  780
CMKTLHKLGR TTIEVLVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	4e-35	Nin-like family protein