PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177478.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 243aa MW: 27829.6 Da PI: 5.6143

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.8e-15	20	62	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +eEde+l+ av lG ++W++ a+ g++R++k+c++rw +yl XP_027177478.1 20 EEEDERLIAAVSILGERRWDSLAKASGLRRSGKSCRLRWMNYL 62 7****************************************97 PP
2	Myb_DNA-binding	55.4	1.4e-17	71	113	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T+eE+ l+++++kq+G++ W++Iar ++ gRt++++k++w+++l XP_027177478.1 71 ITEEEEHLIIQLHKQWGNR-WSRIARSLP-GRTDNEIKNYWRTHL 113 59***************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MDHYQVAMQE AEMRKGPGLE EEDERLIAAV SILGERRWDS LAKASGLRRS GKSCRLRWMN 60 YLRPNLKHGH ITEEEEHLII QLHKQWGNRW SRIARSLPGR TDNEIKNYWR THLRKKALIL 120 EQESSASNSR QSVTTTASTA ATTNNSEQNS PLGICEAFSS LHSNNGDWDS EKDDYNLRTC 180 GDLSGEVEKL SSLGLAYSPY ATRLTDWTSN WPNLENCGDE YSSSGYDDET NLWDSSLFIW 240 NMH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	2e-55	MYB family protein