PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177604.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 362aa MW: 40357.9 Da PI: 8.9045

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.4	2.2e-12	179	225	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h +Er+RR+++ + ++ L ++P + kKl+Ka++L Av++Ik+L XP_027177604.1 179 QDHILAERKRRQKLSKHIAALSAVVPDL-----KKLDKASVLGGAVKHIKQL 225 67999*********************.....9***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MARSEINHMD LSTEKWLSEI LEMDVPALCY QWPMMNSIDQ SVNEDILFNR FSSSDHESYP 60 IHPSSSIKNK QLHEASQTSG VSLSQPIQLI NNDKDSRLIC TSRKPPSSPS PRIISFGAGT 120 CNYPKHTVKT KSDKMMHLGT AYYSYISPNS FNQEPSEALE YGVSSPFEKG FSGTPVRAQD 180 HILAERKRRQ KLSKHIAALS AVVPDLKKLD KASVLGGAVK HIKQLDKRVK FFEKEEKKRN 240 QLEELLVSAM KKPRPNNDNS SSSAENVSNN SSCDHHSSSS VEVQVTSSGG DMLIKIECKN 300 HEGILLGFSS LMKRIHLNIT SSSFMQFGHG MLFIGAVAQV DEKFSVTAEF LANNIRQALL 360 KL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MARSEINHMD LSTEKWLSEI LEMDVPALCY QWPMMNSIDQ SVNEDILFNR FSSSDHESYP  60
IHPSSSIKNK QLHEASQTSG VSLSQPIQLI NNDKDSRLIC TSRKPPSSPS PRIISFGAGT  120
CNYPKHTVKT KSDKMMHLGT AYYSYISPNS FNQEPSEALE YGVSSPFEKG FSGTPVRAQD  180
HILAERKRRQ KLSKHIAALS AVVPDLKKLD KASVLGGAVK HIKQLDKRVK FFEKEEKKRN  240
QLEELLVSAM KKPRPNNDNS SSSAENVSNN SSCDHHSSSS VEVQVTSSGG DMLIKIECKN  300
HEGILLGFSS LMKRIHLNIT SSSFMQFGHG MLFIGAVAQV DEKFSVTAEF LANNIRQALL  360
KL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	190	ERKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	5e-23	bHLH family protein