PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177605.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 548aa MW: 61724.9 Da PI: 4.8275

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.3	3e-12	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l + G +W+ +++ g+ R++k+c++rw +yl XP_027177605.1 14 KGPWSADEDMKLTSFILTNGQCCWRDVPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.9	1.7e-16	70	111	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d++ qlG++ W++Ia++++ gRt++++k++w+++ XP_027177605.1 70 LSEHEEKMVIDLHSQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 5899*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MGRRPCCDKV GLTKGPWSAD EDMKLTSFIL TNGQCCWRDV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEHEEKMVID LHSQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLINMG 120 IDPVTHKPLP QPTSATDQSQ DEQPKNHPDS DQETKKEPTS SVSINDIISE MDEQKREAET 180 SMQSTLTDAI QEEEDKSISI PQCQIDSSSV EFNNVFSIDE VPMIEPDEIF IPFARASSTL 240 ASTSSSSSLY SSFDRNSSNC NMNVDFWDDD FISNLDMLTN DDSDRNNLAA VIGLEPSPAQ 300 YHVEMLDEVS VIGSPVKCIK QLVEREKLLE EEVKKRKPTE ESVVSPTKKL VLVRMFQVKI 360 TGEEVLIRVQ CKNHKKILLE FISLIEKIGL SIKSCSFVPL EDEMHLINAV AQLDKLSTII 420 EGAFKYIKDF QEDKKRILEE YSAVTSKKSR LSSLDDTTSS EENLDSSAEQ SPLNIDINTA 480 GDDVVFVIRC REHKGIIDEI SGEVEKHHLR VITNCSMESG NGELVVKFGC FLVADGCRIQ 540 LDDRGPCD

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MGRRPCCDKV GLTKGPWSAD EDMKLTSFIL TNGQCCWRDV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEHEEKMVID LHSQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLINMG  120
IDPVTHKPLP QPTSATDQSQ DEQPKNHPDS DQETKKEPTS SVSINDIISE MDEQKREAET  180
SMQSTLTDAI QEEEDKSISI PQCQIDSSSV EFNNVFSIDE VPMIEPDEIF IPFARASSTL  240
ASTSSSSSLY SSFDRNSSNC NMNVDFWDDD FISNLDMLTN DDSDRNNLAA VIGLEPSPAQ  300
YHVEMLDEVS VIGSPVKCIK QLVEREKLLE EEVKKRKPTE ESVVSPTKKL VLVRMFQVKI  360
TGEEVLIRVQ CKNHKKILLE FISLIEKIGL SIKSCSFVPL EDEMHLINAV AQLDKLSTII  420
EGAFKYIKDF QEDKKRILEE YSAVTSKKSR LSSLDDTTSS EENLDSSAEQ SPLNIDINTA  480
GDDVVFVIRC REHKGIIDEI SGEVEKHHLR VITNCSMESG NGELVVKFGC FLVADGCRIQ  540
LDDRGPCD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	5e-84	MYB family protein