PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177631.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 345aa MW: 38265.6 Da PI: 6.7861

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177631.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.9	1.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l ++++++G g+W++ ++ g++R++k+c++rw +yl XP_027177631.1 14 KGPWTAEEDEKLTKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	57.2	3.8e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W+tIa +++ gRt++++k++w+++l XP_027177631.1 67 RGKFSPEEEQTILNLHAVLGNK-WSTIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGRSPCCDET GLKKGPWTAE EDEKLTKYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SPEEEQTILN LHAVLGNKWS TIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHRPRT DIFSSLPHLI ALANLKELME QNSWEKQAVR LQTEAAQIAK LQYLQYLLQP 180 PAASMPSLSN SLSATIPDME AYNLLNSLSA VKDSQVLSTN PMETPIPSSI MATNTLQAVH 240 ESIPFSHLPD LESPCSFQTS MNKDHMVQAS NLTILCSQGE NSPTSPWLPH SSLSPSPPPP 300 PVIPPMTEVS ITNGGDACST SSYEGGPSSI WPELLLDDPL FHEIA

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGRSPCCDET GLKKGPWTAE EDEKLTKYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SPEEEQTILN LHAVLGNKWS TIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DIFSSLPHLI ALANLKELME QNSWEKQAVR LQTEAAQIAK LQYLQYLLQP  180
PAASMPSLSN SLSATIPDME AYNLLNSLSA VKDSQVLSTN PMETPIPSSI MATNTLQAVH  240
ESIPFSHLPD LESPCSFQTS MNKDHMVQAS NLTILCSQGE NSPTSPWLPH SSLSPSPPPP  300
PVIPPMTEVS ITNGGDACST SSYEGGPSSI WPELLLDDPL FHEIA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	3e-98	MYB family protein