PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027177927.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 569aa    MW: 66401.2 Da    PI: 9.1522
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027177927.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.87.6e-1864154190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                     +fY  + k+vGF +r + +kk  r+g +t +++vC++eg+r+++  +  +++++ +  tr+gC a++ v+ +k  +k+ ++++  +HnH+la
  XP_027177927.1  64 EFYLCHRKMVGFGIRERDEKKD-RKGIVTYKRWVCNREGFRNSKWLNlVNRKKEAKRLTRVGCLATIIVQWNKnIQKFTIKQFTMDHNHQLA 154
                     6999999*********999887.7788****************99886788888999*************99989***************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    
MIASRIMLKM EEMTAHVDEL VQLSNKSAKP GGGISWRTIV DRLDKLSSDE IQLLTFDSIE  60
DAREFYLCHR KMVGFGIRER DEKKDRKGIV TYKRWVCNRE GFRNSKWLNL VNRKKEAKRL  120
TRVGCLATII VQWNKNIQKF TIKQFTMDHN HQLANQEFVQ FLRSHRSVNP ADLEHAILMH  180
GVGIRIPQIV DLQAYQAGGH NKMGYTEKDL RNAVDQFHRN PLEVGDASQV LAYLDGRANG  240
EPNFFYKYAV DVEKRLIRLF WTDSQSRLDY QSFGDVLVFD STYRTNAYRK PLVILAGVNH  300
HYVTTIFGCA LIADETEDTY KWVLETFLEA MEKKAPISVV TDGDGAMRNA IKAVIPYARH  360
RLCAWHLKRN VVTNTNKGFV LDFDMAMNMI CSHEEFERRW HLLVEKHNLR DNQWVVDLYN  420
KREKWAAAFL RGHFFAGMKS TQRSEQLNAT AHKYLQFKML LYPFAQRFEL FLSKVRRNEH  480
KEECITSQSS PVLITHLREL EGNAASIFTR KIFLKIRDEI SAEASLRLVS VVDQDKVKLY  540
TFTEYLHQIC SWQVELDKSE EPFIDVINS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
183118KKDRKGIVTYKRWVCNREGFRNSKWLNLVNRKKEAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-89FAR1 family protein