PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177952.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 540aa MW: 61766.9 Da PI: 9.2857

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.6	4.9e-19	82	171	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y YA+ +GF vrk ++k ++g + r + C+keg+r+e++ + ++ r+++a+tr++C+a+lkv++++ ++k++v+++++ H H l+ XP_027177952.1 82 LYMMYARATGFGVRKGCKRKD-KKGIVRVRSWLCNKEGERHEKHLNrGDRIREPKAVTRVNCEAHLKVRLHElKQKYVVAEFVSGHCHRLC 171 699***********98888.7777************99885678899***********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MVEGHPWSTR DVAASAEGEE SGNRLKIVHS TTNCRTERIL GDGAIGDIVG EDGPNVNAAF 60 HCIDDIDVGS MEFDSIEEAE ALYMMYARAT GFGVRKGCKR KDKKGIVRVR SWLCNKEGER 120 HEKHLNRGDR IREPKAVTRV NCEAHLKVRL HELKQKYVVA EFVSGHCHRL CSPESVSFMR 180 SHRKVGKSDL QQAVLMQQAG IRTSHIMRLL AVQAGGYRNL GFHETDMYNA LNRQRQVAVG 240 DGDSDSALAF LLGKQRGDPN LFFKYSVDGH GRLNRLLWAD SVCRDDYRCF GDVLVFDSTY 300 NTNQYRFPLV VLCGVNNHYS TCIFACAFIV REGDEGYDWV ISTFLEAMNG RKPIAVVTDG 360 DKSMRKCIKK LMPTAKHRLC SFHLEMNAAT NVRDKEFLQA FKTCMFMNST IPNFETRWAG 420 VVRRFRLENN EWVKKMYRKR ELWAMAFLRG NFFGGVRSTQ RCEKMHQVLK LHLTPKLKFF 480 ECLQTYDLAV GRLRHEERRQ RAVTEHTTLL GATQLQALEK HAAEVFTRST FVVCPFLKIP

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MVEGHPWSTR DVAASAEGEE SGNRLKIVHS TTNCRTERIL GDGAIGDIVG EDGPNVNAAF  60
HCIDDIDVGS MEFDSIEEAE ALYMMYARAT GFGVRKGCKR KDKKGIVRVR SWLCNKEGER  120
HEKHLNRGDR IREPKAVTRV NCEAHLKVRL HELKQKYVVA EFVSGHCHRL CSPESVSFMR  180
SHRKVGKSDL QQAVLMQQAG IRTSHIMRLL AVQAGGYRNL GFHETDMYNA LNRQRQVAVG  240
DGDSDSALAF LLGKQRGDPN LFFKYSVDGH GRLNRLLWAD SVCRDDYRCF GDVLVFDSTY  300
NTNQYRFPLV VLCGVNNHYS TCIFACAFIV REGDEGYDWV ISTFLEAMNG RKPIAVVTDG  360
DKSMRKCIKK LMPTAKHRLC SFHLEMNAAT NVRDKEFLQA FKTCMFMNST IPNFETRWAG  420
VVRRFRLENN EWVKKMYRKR ELWAMAFLRG NFFGGVRSTQ RCEKMHQVLK LHLTPKLKFF  480
ECLQTYDLAV GRLRHEERRQ RAVTEHTTLL GATQLQALEK HAAEVFTRST FVVCPFLKIP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-73	FAR1 family protein