PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177964.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 577aa MW: 65067.4 Da PI: 7.2266

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.3e-19	34	89	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ + +++eq+++Le++F+++++p++++r++L++++gL+ rq+k+WFqN+R++ k XP_027177964.1 34 RKQYHHHSAEQVQRLEAFFKECPHPDENQRRQLSREIGLEPRQIKFWFQNKRTQTK 89 6888999*********************************************9988 PP
2	START	37.8	4.8e-13	253	313	147	206
ESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 147 llpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ++pSg+li++++ng+ +v wvehv +++ + h l++ +v ++a gak+w tlqr ce+ XP_027177964.1 253 MFPSGCLIQDMPNGKANVAWVEHVQVDDISLtHPLYKDMVCDSQAGGAKRWIVTLQRMCER 313 68************************8777*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MSFKVSSRNG FALESNGSAD EHDDSSNSRR KRERKQYHHH SAEQVQRLEA FFKECPHPDE 60 NQRRQLSREI GLEPRQIKFW FQNKRTQTKS HNERSDNNAL RVENDRFYYE TLAMREALRN 120 LLERASRAVS TFSRRSGVLE SYLSRENIPR TSMNTLLPQR FSEIQGMEKS VMVETTVNAM 180 DELLELFRGN EPLWVKSPTN ERYLIHRETH DKLYPKISHI NSSSSWIESS RDSGLVPITT 240 RHLIDIFQDP TWMFPSGCLI QDMPNGKANV AWVEHVQVDD ISLTHPLYKD MVCDSQAGGA 300 KRWIVTLQRM CERFAFSMGP RYTPGHELEG VIDAPEGRKS LTKLSHKMVK NFCHMLSMLE 360 KLDLPQLSEL NSNGFRVSVH RSDISGQPNN MIVCVAASLR LPTSFENLFD FFKDVHARVQ 420 WDVLSDGNPV HEIAHISTGT HPGNTISLMQ PINRKENMLI LQESSTDLLG ANLIDAPVPV 480 SAITSAMSGK DTTDTNVLPS GFIISSDGVD DSGTRAGASS SSNMTGSNSS LLTVAFQIMV 540 RPDTFSDRLI TDSVATIHAL ITSTVQKIRV AVGSRFG

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MSFKVSSRNG FALESNGSAD EHDDSSNSRR KRERKQYHHH SAEQVQRLEA FFKECPHPDE  60
NQRRQLSREI GLEPRQIKFW FQNKRTQTKS HNERSDNNAL RVENDRFYYE TLAMREALRN  120
LLERASRAVS TFSRRSGVLE SYLSRENIPR TSMNTLLPQR FSEIQGMEKS VMVETTVNAM  180
DELLELFRGN EPLWVKSPTN ERYLIHRETH DKLYPKISHI NSSSSWIESS RDSGLVPITT  240
RHLIDIFQDP TWMFPSGCLI QDMPNGKANV AWVEHVQVDD ISLTHPLYKD MVCDSQAGGA  300
KRWIVTLQRM CERFAFSMGP RYTPGHELEG VIDAPEGRKS LTKLSHKMVK NFCHMLSMLE  360
KLDLPQLSEL NSNGFRVSVH RSDISGQPNN MIVCVAASLR LPTSFENLFD FFKDVHARVQ  420
WDVLSDGNPV HEIAHISTGT HPGNTISLMQ PINRKENMLI LQESSTDLLG ANLIDAPVPV  480
SAITSAMSGK DTTDTNVLPS GFIISSDGVD DSGTRAGASS SSNMTGSNSS LLTVAFQIMV  540
RPDTFSDRLI TDSVATIHAL ITSTVQKIRV AVGSRFG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	36	RRKRERKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	1e-81	HD-ZIP family protein