PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027178162.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 351aa MW: 40947.6 Da PI: 7.861

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027178162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.3	5.5e-13	35	114	12	98
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +g + +p f++++g++ ++ ++l+ ++g sW ++l ++ +++l kGWk+F++ ++e f+vFk+ g+s+f v +f+ XP_027178162.1 35 DRG-IKIPTAFMRDYGES--LEQVVVLKVPTGASWPIEL--LQTEFGTWLDKGWKDFAEYYSIRECHFLVFKYGGDSQF--QVIIFD 114 334.89*******966..6679***********..999999*************************99999..888887 PP
2	B3	53.5	4.2e-17	255	350	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 f++ + ps+v+ s+ l ++ fa+++ +k+ ++ ++ l+ ++g + W v++ + + +++GW+eFv +n+L +gD++vF+l+++ + f + XP_027178162.1 255 FISFMQPSYVTYSCKLFFSPVFAKKY-LKECKHWDMELRVSEGtKIWPVTC--YIYTTKAKIKRGWEEFVLDNNLMVGDVCVFELMKDnRMF--N 344 788899******************.34456678888886666***..77777778**********************9964555..9 PP EEEE-S CS B3 94 vkvfrk 99 v+++r+ XP_027178162.1 345 VTIYRR 350 999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MATNQRGNKR SLDQALNHQA KKPPHFFKVV LSPMDRGIKI PTAFMRDYGE SLEQVVVLKV 60 PTGASWPIEL LQTEFGTWLD KGWKDFAEYY SIRECHFLVF KYGGDSQFQV IIFDPSASEI 120 EYRLEDPEDH GKHDHKNQLP MRRRTMFQKS DEVESDDDSF EILGEASAAA SCHTKQRRKS 180 AQIHEEQDSD SRKNENVEKL EVDVNPPQKM IKKESSEGVP STRQSAIAKS EKVIDKDKFI 240 SYQRAKTFTS DNPFFISFMQ PSYVTYSCKL FFSPVFAKKY LKECKHWDME LRVSEGTKIW 300 PVTCYIYTTK AKIKRGWEEF VLDNNLMVGD VCVFELMKDN RMFNVTIYRR N

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MATNQRGNKR SLDQALNHQA KKPPHFFKVV LSPMDRGIKI PTAFMRDYGE SLEQVVVLKV  60
PTGASWPIEL LQTEFGTWLD KGWKDFAEYY SIRECHFLVF KYGGDSQFQV IIFDPSASEI  120
EYRLEDPEDH GKHDHKNQLP MRRRTMFQKS DEVESDDDSF EILGEASAAA SCHTKQRRKS  180
AQIHEEQDSD SRKNENVEKL EVDVNPPQKM IKKESSEGVP STRQSAIAKS EKVIDKDKFI  240
SYQRAKTFTS DNPFFISFMQ PSYVTYSCKL FFSPVFAKKY LKECKHWDME LRVSEGTKIW  300
PVTCYIYTTK AKIKRGWEEF VLDNNLMVGD VCVFELMKDN RMFNVTIYRR N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-42	B3 family protein