PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027178166.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 396aa MW: 46135.8 Da PI: 8.3077

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027178166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40	6.9e-13	35	114	12	98
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +g + +p f++++g++ ++ ++l+ ++g sW ++l ++ +++l kGWk+F++ ++e f+vFk+ g+s+f v +f+ XP_027178166.1 35 DRG-IKIPTAFMRDYGES--LEQVVVLKVPTGASWPIEL--LQTEFGTWLDKGWKDFAEYYSIRECHFLVFKYGGDSQF--QVIIFD 114 334.89*******966..6679***********..999999*************************99999..888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MATNQRGNKR SLDQALNHQA KKPPHFFKVV LSPMDRGIKI PTAFMRDYGE SLEQVVVLKV 60 PTGASWPIEL LQTEFGTWLD KGWKDFAEYY SIRECHFLVF KYGGDSQFQV IIFDPSASEI 120 EYRLEAPEDH GKHDHKNQLP MRRRTMFQKS DEVESDDDSF EILGEVSAAA SCHTKQRRKS 180 AQIHEEQDSD SRKNENVEKL EVDVNPPQKM IKKESSEGVP SSRQSAIAKS EKVIDKAKFI 240 SYQRAKTFTS ENPFFISFMQ PSYVTYSCKL FFSLVFAKKY LKECKHWDME LRVSEGTKIW 300 PVTCYIYTTK AKIKRGWEEF VLDNNLMWFC ACEQVILLLW CNVSVRMEIK DVKHTYREQR 360 CSVPLVFHIA PWKEKLQASS LSPFLIAEWK NLGQSF

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MATNQRGNKR SLDQALNHQA KKPPHFFKVV LSPMDRGIKI PTAFMRDYGE SLEQVVVLKV  60
PTGASWPIEL LQTEFGTWLD KGWKDFAEYY SIRECHFLVF KYGGDSQFQV IIFDPSASEI  120
EYRLEAPEDH GKHDHKNQLP MRRRTMFQKS DEVESDDDSF EILGEVSAAA SCHTKQRRKS  180
AQIHEEQDSD SRKNENVEKL EVDVNPPQKM IKKESSEGVP SSRQSAIAKS EKVIDKAKFI  240
SYQRAKTFTS ENPFFISFMQ PSYVTYSCKL FFSLVFAKKY LKECKHWDME LRVSEGTKIW  300
PVTCYIYTTK AKIKRGWEEF VLDNNLMWFC ACEQVILLLW CNVSVRMEIK DVKHTYREQR  360
CSVPLVFHIA PWKEKLQASS LSPFLIAEWK NLGQSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	9e-34	B3 family protein