PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027178641.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 242aa MW: 26520.1 Da PI: 7.9446

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027178641.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.7	6e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA r+ +Pv+Gavg++ ++++q++q+ XP_027178641.1 2 SCNGCRVLRKGCSENCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLFEAAGRTVNPVNGAVGLLGTGNWQVCQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_027178641.1 97 AVETVLR 103 *999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MSCNGCRVLR KGCSENCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLFE AAGRTVNPVN GAVGLLGTGN WQVCQAAVET VLRGGTLRAI PDHLVGGDSS 120 DLDETVSECT TDMFKLHRHQ DPFSINATNY LYGRSSDGSK MQKRRRKPDE QAVKVMQLAD 180 LDLSLTPGFE GGKYRCLLPE KRRLGSPSMN SEESGTTTCF ESNTTDHQAG TGRERKLLSL 240 FN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	7e-82	LBD family protein