PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027178946.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 341aa MW: 38326 Da PI: 7.8092

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027178946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.3e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl XP_027178946.1 14 RGPWSPEEDAKLKAYIEQYGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	37.8	4.5e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_027178946.1 69 GGFSEEEDSIICSLYMNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDAKLKAYIE QYGTGGNWIA LPQKIGLRRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDSIIC SLYMNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK 120 QRKDQRTRAA SSLKQEMNRK KENFMTTEAI HVLHSHQLQQ PLAFPAVIPQ QQAHDVEDQA 180 VIIAGKLSAD DQQANGNSFN NHNSLYSCDI SFGEGQACEN PLSMASCSQQ CSPSSYYPIH 240 GVIANSNIPC YSSFPFHELN GMEYINNFHQ SDTLQSFSGT DTVNRSTITG TSPESTSWGD 300 TNSLVYSPIV SCYEICQQPI QQSCTLEKSS YFRMQQETVL Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	2e-82	MYB family protein