PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027179024.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YC

Protein Properties

Length: 279aa MW: 30872.4 Da PI: 4.9678

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027179024.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.2	8.6e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+sk+ elf+ +l r++ + + +t++ ++++v++ ++fdfl div r XP_027179024.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKSLELFLQDLCDRTYEITLKRGAKTVNSLHLKQCVQSFNVFDFLRDIVSR 86 5789**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKSLE LFLQDLCDRT YEITLKRGAK 60 TVNSLHLKQC VQSFNVFDFL RDIVSRVPDL GGSEAAAEGS SARKRKAIED EGNDSDNEAK 120 KSHVSETGHT SGRGRGRGRG RGRGRANRTL EKESISQHEK YEDDLDISLQ NGDKKSINIK 180 RMDNGANPDD TKISLVAQNA EAPVRNFDLN VDLNENADSA AIPAGTPSTS SAKPPMEVRP 240 EEYPGWSLAD MESMAIDPVQ LAKLNQRIEE EEEDYDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	142	RGRGRGRGRG
2	133	143	RGRGRGRGRGR
3	135	144	RGRGRGRGRG
4	135	145	RGRGRGRGRGR
5	137	146	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-62	NF-YC family protein