PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027179033.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

M-type_MADS

Protein Properties

Length: 242aa MW: 27660.8 Da PI: 4.3968

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027179033.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.9	2e-16	31	71	10	50
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + +f kR+ +lKK ELSvLCd++v+ i++ +gk+ +++ XP_027179033.1 31 KQSFRKRKDCVLKKSMELSVLCDIKVCAIVIDANGKVETWP 71 569*************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MVAMATNSEE ENRGKEDKKN KRIHPTMRAK KQSFRKRKDC VLKKSMELSV LCDIKVCAIV 60 IDANGKVETW PENKDDLMKI AKLYKDSLDR KDGCDKKRVV EIECGQEATS EAADQHQIIL 120 HPQHEWEDTE NGKEANSEVA GRQLISHSQH EPEEIDSSIE GSSADEFLSD INDPMNDNMP 180 AALVARDDEQ AMEPGIVDDQ INPWYSFDDR QNIDEWLNAL LNWNSFEQDA LVLDTLDTRF 240 LV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	5e-12	M-type_MADS family protein