PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027179040.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 223aa    MW: 25223.5 Da    PI: 9.5417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027179040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-093076347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT eE++l+ +a + +  +    +++Ia +++ g+t +q+k ++q +
   XP_027179040.1 30 EWTFEEEKLFENALAVYDLNswdLFEKIAIKVP-GKTIEQIKQHFQLL 76
                     7*******************6666689******.***********965 PP
2Myb_DNA-binding47.15.7e-15122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rWT+eE+e ++ + k++G+g+W++I+r   +++t+ q+ s+ qky
   XP_027179040.1 122 RWTKEEHENFLLGLKKYGKGDWRSISRNSVLTKTPTQVASHAQKY 166
                      9*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MELSNLSCYP FNEDAILSFT CSPVRSKDSE WTFEEEKLFE NALAVYDLNS WDLFEKIAIK  60
VPGKTIEQIK QHFQLLVEDV NFIETWSGPL PNCRTTNNVE PESTPNSTLT SVENRQKKKG  120
TRWTKEEHEN FLLGLKKYGK GDWRSISRNS VLTKTPTQVA SHAQKYFIRL AKLSTTSNPL  180
SSAASQGKSK IKMTPPSQRV AAYSSASIFY QSPTTATSII KRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-45MYB family protein