PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027179057.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 279aa MW: 30946 Da PI: 8.2066

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027179057.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.7e-18	134	188	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++++++ +++++LA++l+L rqV vWFqNrRa+ k XP_027179057.1 134 RKKLRLTKVQSALLEESFKQHSTLNPKQKQDLARELSLRPRQVEVWFQNRRARTK 188 678899***********************************************98 PP
2	HD-ZIP_I/II	121.9	3.2e-39	134	223	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k q++lLEesF+++++L+p++K++lareL l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l XP_027179057.1 134 RKKLRLTKVQSALLEESFKQHSTLNPKQKQDLARELSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 223 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MGLDDVCSPG LVLGLGFPST AENKPLKTDN QKSRKPCLLK SEQLANFEPS LTLSLSGGDT 60 FDMLVKKLDA TANKASNTEP PPSAADLHRQ DSAASSFSNN SVKRERELGS SEEVEIERVS 120 SRVSDEDDDG SNGRKKLRLT KVQSALLEES FKQHSTLNPK QKQDLARELS LRPRQVEVWF 180 QNRRARTKLK QTEVDCEFLK KCCETLTDEN RRLQKELQEL KALKLAQPLY MQLPAATLTM 240 CPSCERVGGV GENSSSKSPF SMAPKPHFFN PFTNPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	191	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	6e-77	HD-ZIP family protein