PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027179690.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 430aa MW: 48321.8 Da PI: 7.0196

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027179690.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.00038	323	360	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L +l+ + +K + a++L++A+ YI+ L XP_027179690.1 323 RKEKLGDRIAALHRLVSPF-----GKTDTASVLTEAIGYIQFL 360 6778889999999999998.....8****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MYPDHSSRDS QFLNKIIMES ANFNQHHDQP LQQQEHQQQQ QQLIYPAFSS STSSSATLVS 60 TVNGQWNPSM VLEGDDFSRY MNEILPNSRD YFWPKSINSV PSVKKSLLEV DHEDSNCRDF 120 RSYLHHPLPS KGGINPGLFL KSDDMNGSIL KNSYIKNGQQ DVSIDLNENL WIGSFSHSHI 180 NQKLSTNESY SNGDDFASFV GLPPSPPNFM SSGTSESTDQ HQLYASTSLL PTSQSLPLAT 240 EILNCRNFDE GRRTHESFEE RMSSDYCHLR QSSDSPSNSS NKTSTFRKEV SRPKTQKPTP 300 SLAMAKKPRV LAPQSSCATL KVRKEKLGDR IAALHRLVSP FGKTDTASVL TEAIGYIQFL 360 RDQIQTLSMA YLKSSRSSKS CRATRGQEVL SMKEDEDEEE RAMHDLRSRG LCLVPLAFTS 420 YVCCSYNGSI

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MYPDHSSRDS QFLNKIIMES ANFNQHHDQP LQQQEHQQQQ QQLIYPAFSS STSSSATLVS  60
TVNGQWNPSM VLEGDDFSRY MNEILPNSRD YFWPKSINSV PSVKKSLLEV DHEDSNCRDF  120
RSYLHHPLPS KGGINPGLFL KSDDMNGSIL KNSYIKNGQQ DVSIDLNENL WIGSFSHSHI  180
NQKLSTNESY SNGDDFASFV GLPPSPPNFM SSGTSESTDQ HQLYASTSLL PTSQSLPLAT  240
EILNCRNFDE GRRTHESFEE RMSSDYCHLR QSSDSPSNSS NKTSTFRKEV SRPKTQKPTP  300
SLAMAKKPRV LAPQSSCATL KVRKEKLGDR IAALHRLVSP FGKTDTASVL TEAIGYIQFL  360
RDQIQTLSMA YLKSSRSSKS CRATRGQEVL SMKEDEDEEE RAMHDLRSRG LCLVPLAFTS  420
YVCCSYNGSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	8e-37	bHLH family protein