PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027179780.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 80aa    MW: 9213.28 Da    PI: 10.1021
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027179780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-101154345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E +l+ +a +++ ++   +W  +ar +g  +t++++k ++q
   XP_027179780.1 11 SWTAKENKLFEKALAKYDKDtadRWQNVARAVG--KTEEEVKRHYQ 54
                     7*******************************8..9*********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    
MASNSLSSSS SWTAKENKLF EKALAKYDKD TADRWQNVAR AVGKTEEEVK RHYQILVEDL  60
KHIESGNVPF PNYRSGRNKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-31MYB_related family protein