PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027180225.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 819aa MW: 90287.9 Da PI: 4.9296

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027180225.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.2	3.8e-20	90	145	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k XP_027180225.1 90 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 145 688899***********************************************998 PP
2	START	148.8	4.9e-47	287	511	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 la + +el+k+ +a ep+W + s e +n de+++ f+ +v ++ea r +vv+m++ +lv +ld + +W e ++ +a+ XP_027180225.1 287 LAISSVEELMKMCQACEPLWLRTSdgskEVLNVDEYRRLFQW-GVdlkqnpsqVRTEATRHNAVVIMNSITLVDAFLDAN-KWMELFPsivsRAK 379 6778899***************99999999**9954.34688888888**********************.********** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 tl+v++sg g lqlm+aelq++splvp R++ f+Ry+ q ++g+w+ivd +d+ +++ + ++ + ++pSg++i++++ng+s+vtwv XP_027180225.1 380 TLQVVTSGisgqasGSLQLMYAELQVPSPLVPtRESHFLRYCHQnAEEGTWAIVDFPLDNFNNNYPTIPYYK--RRPSGCIIQDMPNGYSRVTWV 472 *******************************************************9999877888888..9**************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ehv+ ++ + +++lv+sg ++gak+w++ lqrqce+ XP_027180225.1 473 EHVEIDSTPLNQTINHLVSSGNVFGAKRWLSVLQRQCER 511 ***999*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence
MFGDCQILSS MGGNGVPSDS YYPSSIQNPS FSFMTNLPFN IFPPALIPKE ENGMSRSKEE 60 ILESGSGSEH VEGGVSGNEQ EAEQQQPTKK KRYHRHTARQ IQEMEALFKE CPHPDDKQRL 120 KLSQDLGLKP RQVKFWFQNR RTQMKAQQDR ADNAILRAEN ESLKNENYRL QAALRNVVCP 180 NCGGPAVLGE MGFDEQTVRL ENARLKEEYD RVCALLSQYG GRAIPEIGTS SLLAPSLDLD 240 INMLPRKFEE PIGDCPGMLS MPFIPENPNF SGGVLILDEE KSIAMELAIS SVEELMKMCQ 300 ACEPLWLRTS DGSKEVLNVD EYRRLFQWGV DLKQNPSQVR TEATRHNAVV IMNSITLVDA 360 FLDANKWMEL FPSIVSRAKT LQVVTSGISG QASGSLQLMY AELQVPSPLV PTRESHFLRY 420 CHQNAEEGTW AIVDFPLDNF NNNYPTIPYY KRRPSGCIIQ DMPNGYSRVT WVEHVEIDST 480 PLNQTINHLV SSGNVFGAKR WLSVLQRQCE RIASLMARNI SDLGVIPSPE ARKNVMYLSQ 540 RMIRTFCMNI SNACGQSWTA LSDSAEDTVR IATRKVSGPG EPNGLILTAV STTWLPYPHY 600 QVFDLLRDER RRSQLDVLSN GNALQEVAHI ANGSHPGNCV SLLRINVASN SSQKVELMLQ 660 ESCTDDSGSL IVYTTVDVDS IQLAMNGEDP ECIPLLPVGF VIHPLENGSS SHDGSSLDND 720 QTSENGNNLP ADLSGCLLTV GLQVLASTIP TAKLNLSSVT AINQHICNTV QQISAALGNH 780 GSNIGTTSSN DNDNIIIASL GEPSAPAPPP VQPDQVSTP

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence

MFGDCQILSS MGGNGVPSDS YYPSSIQNPS FSFMTNLPFN IFPPALIPKE ENGMSRSKEE  60
ILESGSGSEH VEGGVSGNEQ EAEQQQPTKK KRYHRHTARQ IQEMEALFKE CPHPDDKQRL  120
KLSQDLGLKP RQVKFWFQNR RTQMKAQQDR ADNAILRAEN ESLKNENYRL QAALRNVVCP  180
NCGGPAVLGE MGFDEQTVRL ENARLKEEYD RVCALLSQYG GRAIPEIGTS SLLAPSLDLD  240
INMLPRKFEE PIGDCPGMLS MPFIPENPNF SGGVLILDEE KSIAMELAIS SVEELMKMCQ  300
ACEPLWLRTS DGSKEVLNVD EYRRLFQWGV DLKQNPSQVR TEATRHNAVV IMNSITLVDA  360
FLDANKWMEL FPSIVSRAKT LQVVTSGISG QASGSLQLMY AELQVPSPLV PTRESHFLRY  420
CHQNAEEGTW AIVDFPLDNF NNNYPTIPYY KRRPSGCIIQ DMPNGYSRVT WVEHVEIDST  480
PLNQTINHLV SSGNVFGAKR WLSVLQRQCE RIASLMARNI SDLGVIPSPE ARKNVMYLSQ  540
RMIRTFCMNI SNACGQSWTA LSDSAEDTVR IATRKVSGPG EPNGLILTAV STTWLPYPHY  600
QVFDLLRDER RRSQLDVLSN GNALQEVAHI ANGSHPGNCV SLLRINVASN SSQKVELMLQ  660
ESCTDDSGSL IVYTTVDVDS IQLAMNGEDP ECIPLLPVGF VIHPLENGSS SHDGSSLDND  720
QTSENGNNLP ADLSGCLLTV GLQVLASTIP TAKLNLSSVT AINQHICNTV QQISAALGNH  780
GSNIGTTSSN DNDNIIIASL GEPSAPAPPP VQPDQVSTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	HD-ZIP family protein