PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027181309.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 284aa    MW: 32589.6 Da    PI: 9.9078
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027181309.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.6e-19139228198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v +  +l lp +f+e+h    +++++++lede+g ++e  +i ++++    l++GW+ F+ +++L++gD +vF+l++ ++f  +v 
  XP_027181309.1 139 FIKSMVRSHVYSCFWLGLPSSFCEDHLP--KSTVDMVLEDEEGLEFEAVYISKRSG----LSGGWRAFALEHKLDDGDALVFELIEPTRF--KVY 225
                     89************************53..3789****************655555....9***********************987777..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_027181309.1 226 IVR 228
                     877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MAKDNDANTY EEARKQRVLD NKKRFEDLGI LSISKSLSEV SKSEKKSQQR SLSRPKPNDV  60
YMVEPRRSSR ARTQVTSYRD DVDVDLPRMR KRSKWSSSWA SYLARPMEEV RAASYEERSR  120
ARLSAEKLQS NLQLENPSFI KSMVRSHVYS CFWLGLPSSF CEDHLPKSTV DMVLEDEEGL  180
EFEAVYISKR SGLSGGWRAF ALEHKLDDGD ALVFELIEPT RFKVYIVRAV SCSKQEEGGS  240
DAGETPKEKT KQRKKDNTRS KDSIRPEEDA SSKASGRRRS SRLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283GRRRSSRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-57B3 family protein