PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027181318.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 295aa    MW: 33315.4 Da    PI: 8.1144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027181318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed+ll d+v+  G g+W++ +++ g+ R++k+c++rw +yl
   XP_027181318.1 14 RGPWSPKEDKLLTDYVQANGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding46.39.6e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg  T+ E++l++++  +lG++ W++Ia++++ gRt++++k++w++
   XP_027181318.1  67 RGDITAAEEDLIIRLQSLLGNR-WSLIAARLP-GRTDNEIKNHWNT 110
                      67789*****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MGRAPCCSKV GLQRGPWSPK EDKLLTDYVQ ANGEGQWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPGIKRGDI TAAEEDLIIR LQSLLGNRWS LIAARLPGRT DNEIKNHWNT RLLKRLHKGG  120
IQPQKSSTSL SKKSSKQPTK KKSNKKLPDH FHNTTATSST EDVLHREEFS GNDNATINMA  180
QVYRPKPIKI CSDFAKSNSF GSVASGSTNK SSSNQEEGEE VVDKLEEEAK TSQVSDISWS  240
SFELDDQSYE RIFEISDENQ ILFYDDDDCD LSLQAAPVSD INLLDKVYDE YLRLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-61MYB family protein