PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027181320.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 238aa    MW: 26915.9 Da    PI: 5.4293
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027181320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.9e-151053146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg  T+ E++l++++  +lG++ W++Ia++++ gRt++++k++w++
   XP_027181320.1 10 RGDITAAEEDLIIRLQSLLGNR-WSLIAARLP-GRTDNEIKNHWNT 53
                     67789*****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MNYLRPGIKR GDITAAEEDL IIRLQSLLGN RWSLIAARLP GRTDNEIKNH WNTRLLKRLH  60
KGGIQPQKSS TSLSKKSSKQ PTKKKSNKKL PDHFHNTTAT SSTEDVLHRE EFSGNDNATI  120
NMAQVYRPKP IKICSDFAKS NSFGSVASGS TNKSSSNQEE GEEVVDKLEE EAKTSQVSDI  180
SWSSFELDDQ SYERIFEISD ENQILFYDDD DCDLSLQAAP VSDINLLDKV YDEYLRLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.14e-28MYB family protein