PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027181563.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 619aa MW: 70141.3 Da PI: 6.0968

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027181563.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.3	1.6e-14	420	466	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +Er+RR+++N++f L +l+P++ +Kl+K++iL A++Y+k+L+ XP_027181563.1 420 NHVLAERKRREKLNERFMMLGSLVPSN-----GKLDKVSILDGAIDYLKELE 466 7999********************9.....9**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence
MATGRLQNQP AESLRKQLAL AVKSIQWSYA IFWSISCRQP GVLEWIDGYY NGDIKTRKTI 60 QAAEPSADQL ELQRSEQLRE LYESLSAAET SPQAKRPSVA LSPEDLTDTE WYFLVCMSFV 120 FITGQGLPGR TLAKNQITWL CNAHQADSKV FPRSLLAKSA SIQVVEDRNL IRHIKSAFLD 180 NPYPVISKIP QYVPNTNAKD IVVCGLDDDM IEANFEPLVE CEDVKICSPS NSTTGFEDAD 240 QQAQNSHMME GTSDEACHVQ SWRFMDDEIS NCIHDSMNSG DCTPQTYANG EKGVPLSNEE 300 TVNHDFKHDL QECNLKKLDH FNFRSDDAHY QGVLSALLKS SHQLILGPYF TNSNQESSFV 360 SWKIERPQFV QKQGAMSQRV LKSVVFEVPR MHGDWKLKSS KGYGKRESIW RPEADEIDNN 420 HVLAERKRRE KLNERFMMLG SLVPSNGKLD KVSILDGAID YLKELERRVE ELESVKEAIE 480 LEARTKRLQQ EATERTSGNY IMNKVGKSRK PVISKRKASN LEEIEAETNY CTLTECSSDD 540 LTVTVINRNA LIELECPWTE SVFCEIMEAV SKLNLDSHTV QSSNTDGTLT VKIRAKFKGS 600 KVATPGMIRR ALQRVLRKY

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence

MATGRLQNQP AESLRKQLAL AVKSIQWSYA IFWSISCRQP GVLEWIDGYY NGDIKTRKTI  60
QAAEPSADQL ELQRSEQLRE LYESLSAAET SPQAKRPSVA LSPEDLTDTE WYFLVCMSFV  120
FITGQGLPGR TLAKNQITWL CNAHQADSKV FPRSLLAKSA SIQVVEDRNL IRHIKSAFLD  180
NPYPVISKIP QYVPNTNAKD IVVCGLDDDM IEANFEPLVE CEDVKICSPS NSTTGFEDAD  240
QQAQNSHMME GTSDEACHVQ SWRFMDDEIS NCIHDSMNSG DCTPQTYANG EKGVPLSNEE  300
TVNHDFKHDL QECNLKKLDH FNFRSDDAHY QGVLSALLKS SHQLILGPYF TNSNQESSFV  360
SWKIERPQFV QKQGAMSQRV LKSVVFEVPR MHGDWKLKSS KGYGKRESIW RPEADEIDNN  420
HVLAERKRRE KLNERFMMLG SLVPSNGKLD KVSILDGAID YLKELERRVE ELESVKEAIE  480
LEARTKRLQQ EATERTSGNY IMNKVGKSRK PVISKRKASN LEEIEAETNY CTLTECSSDD  540
LTVTVINRNA LIELECPWTE SVFCEIMEAV SKLNLDSHTV QSSNTDGTLT VKIRAKFKGS  600
KVATPGMIRR ALQRVLRKY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	425	430	ERKRRE
2	426	431	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-157	bHLH family protein