PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027181641.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 313aa    MW: 35331.7 Da    PI: 6.8755
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027181641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding651.4e-201562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd++l+++v+ +G gtWk+ +++ g++R++k+c++rw++yl
   XP_027181641.1 15 RGPWTDEEDDKLINYVQNYGHGTWKSLPKKAGLNRCGKSCRLRWNNYL 62
                     89*********************************************7 PP
2Myb_DNA-binding54.42.9e-1768111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++ +Ed l+v+++  lG++ W++Ia++++ gRt++++k++w++
   XP_027181641.1  68 RGMFSDQEDRLIVELHSILGNK-WSKIAAHLP-GRTDNEIKNHWNT 111
                      7889******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MVRSPCCETN HGLKRGPWTD EEDDKLINYV QNYGHGTWKS LPKKAGLNRC GKSCRLRWNN  60
YLRPDIKRGM FSDQEDRLIV ELHSILGNKW SKIAAHLPGR TDNEIKNHWN TKLRRKLLQL  120
GIDPQSHKPV VPDINQFVDF SRFLSAFNPA SNLMNVWTNV LLSQVDATQL AKFQLLQKLL  180
KPVNPGPAQN NLVSSTRFIN ADGAQVNTDF ILPTLQSSNF DPTFPDNNYG LSNAVTFSAQ  240
NDKTNSLSST TSTSSQKNNY LPSVLEATTA HVSSSVDQVN PPQDPLMTSS IIDTFDSWEE  300
LMDNEPFWED ILV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.29e-74MYB family protein