PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027181835.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 613aa    MW: 68651.4 Da    PI: 5.5258
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027181835.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.61.1e-862215921374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kal.ppsetsekn...sseelaalklfsevsPi 90 
                     lv+ Ll+ Ae v+++++e+a +lL r  +l+s +g++++Rl+ yf  AL++r+ r++ ++  + l ++++ +      +s  ++a  + ++  P+
  XP_027181835.1 221 LVQYLLASAELVAKKQFECAGKLLLRCDKLSSDQGNTIERLVYYFSGALHERIDRETGTVTpEGLgKMQSLD--IldmMSGLTSAKIAMQKSVPF 313
                     6899***************************************************54444403343333333..13434444444455******* PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ++s+++  q +l+ v+ ++++Hi+D++i  G+++  L+qaLa+R+++p   l++T++g    +sk ++eetg++La+fA++l+++f++n++++ 
  XP_027181835.1 314 GQVSQFAGTQGVLDHVADATKIHIVDLEIRTGMHYTILMQALATRSQNPIeYLKVTAIGT---KSKAKIEETGRQLASFAQALKLKFSINIIMVA 405
                     **********************************************655449********...689***************************** PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                     ++ dl+ + ++++ +Ea+aV + +  + + +++v les    ++++vk ++P v++v+e e +hns+ F++rf+eal +y a+fdsle  l ++ 
  XP_027181835.1 406 DIMDLNENLFEINADEAVAVWVEYYFMFMIRRQVMLES----LMNVVKAINPLVMIVTEVEGNHNSPVFVTRFTEALFFYGAFFDSLEDCLKHDP 496
                     ******************************99999999....***************************************************** PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ++r+ vE ++l+++i+n+va+eg+er+ r+  ++ W++ + ++G+ +v+ls + + qa+l+l++++ +   +++++ + l++gWk+ p+ s+SaW
  XP_027181835.1 497 KNRMLVESVYLSQAIRNIVATEGEERTIRQVAVNVWKAFFARFGMVQVELSMSSMYQANLVLKNFEcGSSCTLNKDGKGLIIGWKGTPIHSLSAW 591
                     ******************************************************************9999************************* PP

            GRAS 374 r 374
                     +
  XP_027181835.1 592 K 592
                     8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    
MEMFHSDHFE LLGVSGKYDS TEGFHFEDHG KEEKRNCLIT NDDESEASKG IASFCTGALG  60
LNQVHGNTAE KEVIFSKLHQ EQQLKELTGF ACFNDPYFGM ETPPFQSREE EITKLADDVA  120
FANSELNDAK KERPYAGSLQ ILNNYRRRFR KLNVEKMDLP SYQGFTLITG HKLSTDAILK  180
LAAQNFIQSS SKGTTESFVL SHPYASSFGG LCVEDTKDVK LVQYLLASAE LVAKKQFECA  240
GKLLLRCDKL SSDQGNTIER LVYYFSGALH ERIDRETGTV TPEGLGKMQS LDILDMMSGL  300
TSAKIAMQKS VPFGQVSQFA GTQGVLDHVA DATKIHIVDL EIRTGMHYTI LMQALATRSQ  360
NPIEYLKVTA IGTKSKAKIE ETGRQLASFA QALKLKFSIN IIMVADIMDL NENLFEINAD  420
EAVAVWVEYY FMFMIRRQVM LESLMNVVKA INPLVMIVTE VEGNHNSPVF VTRFTEALFF  480
YGAFFDSLED CLKHDPKNRM LVESVYLSQA IRNIVATEGE ERTIRQVAVN VWKAFFARFG  540
MVQVELSMSS MYQANLVLKN FECGSSCTLN KDGKGLIIGW KGTPIHSLSA WKFGCDSKNE  600
DLDFDLLNLS SSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-56GRAS family protein