PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027181903.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 750aa    MW: 84221.2 Da    PI: 5.3931
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027181903.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3534.6e-1083747451374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+ lL++cA+av++ d +  ++lLar+++++s +gd m+Rla+yf+ AL+arla+++++ly   + ++ s    ++ l+ +++f+ + P+ k+s+
  XP_027181903.1 374 LRALLVQCAQAVANFDIRTSNELLARIRQHSSAHGDGMERLAHYFAIALEARLAGTGTTLYTDYRKRRIS---AADILNGYQMFVSAIPFKKVSN 465
                     5789*********************************************************999888888...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN+ I + ++g++r+HiiDf+i +G+QWp+L+q L+ Rpegpp l iTg++ p++g   +e++eetg rLa+++e++gvpfef++ +ak++++
  XP_027181903.1 466 IFANKNIGKLAAGATRLHIIDFGILYGFQWPCLIQRLSVRPEGPPALCITGIDLPQPGlrPAERVEETGLRLARYCERFGVPFEFRP-IAKKWDT 559
                     ***************************************************************************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+L+++ +E+l+Vn+v +l +++de+v  +s+rd+vL+l+k+++P++++ +  +  +ns+ F++rf eal ++s++fd++ea++ re+++r+
  XP_027181903.1 560 IKLEDLKINGDEVLVVNCVERLANVPDETVVENSPRDAVLNLIKRIRPNMFIQSVINGTYNSPFFVTRFREALFHFSSVFDMFEATVLRENQDRA 654
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       Ere+ +r++ nv+aceg+er+er et+++W+ r  +aGF+++pl+++++k ++  ++ ++ + ++v+e+ +++++gWk+r   ++S+W+
  XP_027181903.1 655 LFEREIYARDALNVIACEGTERVERPETYKQWQVRNLRAGFRQLPLDQEIVKIIRGKVKSHYHRDFSVDEDGKWMLQGWKGRVSQAISCWE 745
                     **************************************************************999*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    
MDTLVEPFPF SGNIYDLNYR SMSAHHEQNE VDEYKFDRGS EDFSDASNGS PPPDASSPSG  60
SDGNPPVQGD SNDPMLKFIN EMLMEEDDLT NKPCMFHDCS ALLAAEKSFY DVLTEPKPGP  120
SFFSCYQNAE SPNDDSSQSC YSQSSVCSSS DVNPSVESNW VGNQMGLESA VIQPSHVDLV  180
PQSILLSNQQ LLSSTNDFLD AAHRLDESWM SLLRMSDSSS QRPLDLKAWG SKGEVYGLLP  240
QGDSFSNSTF ESQNNTSNAA AVVEKSVRYH SSNGPSSKKN HGRDDSDDAE EHRSNKQLAS  300
SADESVPLER YDNVLLCPNL NPHLQPEPVF SSSEKALKDE ARNKLQQTER SKASTRGRPR  360
GGKKQGTKRE VVDLRALLVQ CAQAVANFDI RTSNELLARI RQHSSAHGDG MERLAHYFAI  420
ALEARLAGTG TTLYTDYRKR RISAADILNG YQMFVSAIPF KKVSNIFANK NIGKLAAGAT  480
RLHIIDFGIL YGFQWPCLIQ RLSVRPEGPP ALCITGIDLP QPGLRPAERV EETGLRLARY  540
CERFGVPFEF RPIAKKWDTI KLEDLKINGD EVLVVNCVER LANVPDETVV ENSPRDAVLN  600
LIKRIRPNMF IQSVINGTYN SPFFVTRFRE ALFHFSSVFD MFEATVLREN QDRALFEREI  660
YARDALNVIA CEGTERVERP ETYKQWQVRN LRAGFRQLPL DQEIVKIIRG KVKSHYHRDF  720
SVDEDGKWML QGWKGRVSQA ISCWEPVDEQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-175GRAS family protein