PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027182571.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 687aa MW: 80079.4 Da PI: 7.381

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027182571.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.6	2.1e-23	75	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAk+ GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++k+ ++++w++ ++el+HnH ++ XP_027182571.1 75 DFYNGYAKDQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIKLVDSKRWRIVEVELQHNHLVS 159 6*******************999*************99888.....9********************************775 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MLPLWQPLFF FSFYKMEVVC LNSEPAFNEG DEYEHEGDCA SGENADELCA APHLKREPPP 60 PTVGLEFDSF DEAYDFYNGY AKDQGFGIRV SNSWFRSKRK ERYRAKLSCS SAGFKKKSEA 120 NNPRPETRTG CPAMIVIKLV DSKRWRIVEV ELQHNHLVSP EIKRFYKSHK KMILAAQKSQ 180 QAEPVKEIHT IKLYRTSVIN AAPNGYSKVK ERDVRHPTDH SKHLELKEGD AHAVYNYFCR 240 MKLTNPNFFY LMDLDDEGRL KNIFWADARS RSAYIYFSDA IAIDTTCLTN KYELPLVSFV 300 GVNHHGQSVL LGCGFLGHES VEYFVWMFRS WLTCMLGRHP QVILTDQSKS LQMAISEVFP 360 GTRHCYCLSY IMQRVPEKLG GLRGYEAIRK QLNQAVYNSM KIAEFETAWG SMVGQHGLGE 420 NKWLQSLHED RQRWVPVYLK DTSFVGMIPV KENEVSKPLF DGYVHKHTSF KEFLDKYDLA 480 LQRKLMKEAT GDTESRNCSF ELRTKCNFEL QLSKVYTKQI FEKFQIEVEG MYSCFNTRQV 540 NINGPIITFA VKERVEVEES EKEVRQYEVL YETTNMEIRC ICSLFNFRGY LCRHALNVFN 600 YNGVEEIPSQ YILPRWSKDY KRRFPLDPFP NDVDVNDYVL RYNHLLSRAI QVIEEGAQSR 660 ECWKASLQGL EELCRKFALE NVDEVYL

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MLPLWQPLFF FSFYKMEVVC LNSEPAFNEG DEYEHEGDCA SGENADELCA APHLKREPPP  60
PTVGLEFDSF DEAYDFYNGY AKDQGFGIRV SNSWFRSKRK ERYRAKLSCS SAGFKKKSEA  120
NNPRPETRTG CPAMIVIKLV DSKRWRIVEV ELQHNHLVSP EIKRFYKSHK KMILAAQKSQ  180
QAEPVKEIHT IKLYRTSVIN AAPNGYSKVK ERDVRHPTDH SKHLELKEGD AHAVYNYFCR  240
MKLTNPNFFY LMDLDDEGRL KNIFWADARS RSAYIYFSDA IAIDTTCLTN KYELPLVSFV  300
GVNHHGQSVL LGCGFLGHES VEYFVWMFRS WLTCMLGRHP QVILTDQSKS LQMAISEVFP  360
GTRHCYCLSY IMQRVPEKLG GLRGYEAIRK QLNQAVYNSM KIAEFETAWG SMVGQHGLGE  420
NKWLQSLHED RQRWVPVYLK DTSFVGMIPV KENEVSKPLF DGYVHKHTSF KEFLDKYDLA  480
LQRKLMKEAT GDTESRNCSF ELRTKCNFEL QLSKVYTKQI FEKFQIEVEG MYSCFNTRQV  540
NINGPIITFA VKERVEVEES EKEVRQYEVL YETTNMEIRC ICSLFNFRGY LCRHALNVFN  600
YNGVEEIPSQ YILPRWSKDY KRRFPLDPFP NDVDVNDYVL RYNHLLSRAI QVIEEGAQSR  660
ECWKASLQGL EELCRKFALE NVDEVYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein