PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027182618.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 324aa MW: 36427.9 Da PI: 6.8567

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027182618.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed l+d++k +G g W++ +++ g++R++k+c++rw++yl XP_027182618.1 14 RGAWTPSEDRMLIDYIKSHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	51.9	1.7e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_027182618.1 67 RGNITADEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 7999****************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MGRSPCCAKE GLNRGAWTPS EDRMLIDYIK SHGEGKWRSL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TADEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLAKKIRGDQ 120 NLATRSSCVK RKPASTIKSR SVPVLQNLTS THQPPNSEKL EGSATHVVRT KARRLTKVFI 180 NADLQTSCTQ QEQPGMMMAV KAAPSGADAK YGFNDTRTSD NSEEVGPEPA SGAFSGEEGY 240 YSSDFMMDFE MDDDFLSEFL NTDFMEFEQD FPEGPAQGTC IEANDFSPNY CPRPLSHDDR 300 NAQPDLDSMT TLLHTAVAWL HEDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-63	MYB family protein