PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027182759.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family YABBY
Protein Properties Length: 189aa    MW: 21145.9 Da    PI: 7.8875
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027182759.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY226.38e-70161832170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     d+f sseq+Cyv+Cn C+t+lavsvP tslf++vtvrCGhCt+ll vn  ++  ll++ ++l++++ ++      +  ++++s + +   ++t+ 
  XP_027182759.1  16 DHFASSEQLCYVHCNICDTVLAVSVPCTSLFQTVTVRCGHCTNLLPVN--MRGLLLPSANQLHNHFGHTFFSPSPNFLDQISSPTPNFLMNQTTA 108
                     7999*****************************************965..667789999999999988866666666666666555555555555 PP

           YABBY  97 ssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     s ++l ++    ++pr+p ++rPPe+rqr+Psaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl
  XP_027182759.1 109 SDFTLpPQTGFSDLPRPPVMNRPPERRQRIPSAYNRFIKEEIQRIKATNPDISHREAFSAAAKNWAHFPHIQFGL 183
                     5556646777899***999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MSSSSTSSTT TTWSLDHFAS SEQLCYVHCN ICDTVLAVSV PCTSLFQTVT VRCGHCTNLL  60
PVNMRGLLLP SANQLHNHFG HTFFSPSPNF LDQISSPTPN FLMNQTTASD FTLPPQTGFS  120
DLPRPPVMNR PPERRQRIPS AYNRFIKEEI QRIKATNPDI SHREAFSAAA KNWAHFPHIQ  180
FGLMPDQTV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.19e-70YABBY family protein