PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027182934.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 351aa MW: 38450.6 Da PI: 7.064

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027182934.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.9	1.1e-10	103	127	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f++ GtC+y +C+FaH+ XP_027182934.1 103 YKTKLCCKFRA-GTCPYVTNCNFAHS 127 9********.***********8 PP
2	zf-CCCH	18.6	3.3e-06	174	199	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_027182934.1 174 YKGRHCKKFYTEEGCPYGDNCTFLHD 199 78888********************7 PP
3	zf-CCCH	42.3	1.2e-13	234	259	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_027182934.1 234 WKTRICNKWELTGYCPFGSKCHFAHG 259 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MDYHRDSGFS SGNVVQVLSG SSGNGVAGNW GRGSVDQAAW ATEDDYRVWN RETSVEINSN 60 SNYDGRQSQS FSGGEPPNKK SRSSQMEDLT ASSRSKAIGK MFYKTKLCCK FRAGTCPYVT 120 NCNFAHSIEE LRKPPPNWQE IVAAHEEERA ASMEPREEFQ IPSLVGGAES QRSYKGRHCK 180 KFYTEEGCPY GDNCTFLHDE QSKARESEAI SLGPGMGGGY AGNPTGTNLK PSNWKTRICN 240 KWELTGYCPF GSKCHFAHGA EELHQFGGGP VESEVPTTPS DTKQVAVPSK VVADAVVGSV 300 TPVPHSDSYH VGVPAQKLSN VIQKTGQKPH LKWKGPDKIS KIYGDWIDDL E

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MDYHRDSGFS SGNVVQVLSG SSGNGVAGNW GRGSVDQAAW ATEDDYRVWN RETSVEINSN  60
SNYDGRQSQS FSGGEPPNKK SRSSQMEDLT ASSRSKAIGK MFYKTKLCCK FRAGTCPYVT  120
NCNFAHSIEE LRKPPPNWQE IVAAHEEERA ASMEPREEFQ IPSLVGGAES QRSYKGRHCK  180
KFYTEEGCPY GDNCTFLHDE QSKARESEAI SLGPGMGGGY AGNPTGTNLK PSNWKTRICN  240
KWELTGYCPF GSKCHFAHGA EELHQFGGGP VESEVPTTPS DTKQVAVPSK VVADAVVGSV  300
TPVPHSDSYH VGVPAQKLSN VIQKTGQKPH LKWKGPDKIS KIYGDWIDDL E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-124	C3H family protein